PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1AL_FB0C83DD9.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 231aa    MW: 25019.2 Da    PI: 5.006
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1AL_FB0C83DD9.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS128.11e-397228159373
                   GRAS 159 eetgerLakfAeelgvpfefnvl................vakrledl..eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevL 228
                            ee+g rLa+fA++ gv++efnv+                ++++l+++  ++ +Lr++ gEal+Vn++  l ++       +  rd ++
  Traes_1AL_FB0C83DD9.1   7 EEIGLRLANFAKSKGVRLEFNVVnkstatsspsptklqtLCQELACVlsDPPALRLRDGEALVVNCQSWLRHVA------PGSRDGFV 88 
                            689*******************988888777777666655555555566788889999************9998......445778** PP

                   GRAS 229 klvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWr 316
                            ++v+ l P +v+v++++ad++s+s+++r++ ++++++ lfd+l++++p++s  r   E++ +g++i++vv + g+e   r e+ ++  
  Traes_1AL_FB0C83DD9.1  89 DAVRALDPCLVTVTDEDADLDSPSLATRIAGCFNFHWILFDALDTSAPSDSPRRLEHEAA-VGQKIESVVGADGTE---RSESGARLA 172
                            **********************************************************99.**************9...677777888 PP

                   GRAS 317 erleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                            er+++ GF  v ++e++++++++ll++++  g+ v+ e++ lvl+Wk+++ v+++aW
  Traes_1AL_FB0C83DD9.1 173 ERMRRKGFAGVGFGEDEVAEVRHLLSEHA-TGWGVKREEDMLVLTWKGHAAVFTTAW 228
                            9****************************.99************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098518.6111210IPR005202Transcription factor GRAS
PfamPF035143.5E-377228IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
LLGVPDEEIG LRLANFAKSK GVRLEFNVVN KSTATSSPSP TKLQTLCQEL ACVLSDPPAL  60
RLRDGEALVV NCQSWLRHVA PGSRDGFVDA VRALDPCLVT VTDEDADLDS PSLATRIAGC  120
FNFHWILFDA LDTSAPSDSP RRLEHEAAVG QKIESVVGAD GTERSESGAR LAERMRRKGF  180
AGVGFGEDEV AEVRHLLSEH ATGWGVKREE DMLVLTWKGH AAVFTTAWAP N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B2e-197231253475Protein SHORT-ROOT
5b3h_B1e-197231199421Protein SHORT-ROOT
5b3h_E1e-197231199421Protein SHORT-ROOT
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020154951.11e-160scarecrow-like protein 32
TrEMBLA0A3B5Y3P31e-164A0A3B5Y3P3_WHEAT; Uncharacterized protein
STRINGTraes_1AL_FB0C83DD9.11e-168(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122273238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.13e-49GRAS family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]