PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1AS_0523686DD.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 269aa    MW: 32081.2 Da    PI: 8.664
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1AS_0523686DD.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.74.6e-074989344
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
        Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44
                            WT  +   +++a++++G ++ k+Ia++m  g+t+++++ + 
  Traes_1AS_0523686DD.1 49 TWTRRDFNTFIRACEKYGRDDIKSIASEME-GKTEEEVQRYA 89
                           699999999*********************.*******9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129317.1114597IPR017884SANT domain
SMARTSM007172.8E-84695IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.8E-2946100IPR009057Homeodomain-like
CDDcd001679.46E-84993No hitNo description
SuperFamilySSF466895.55E-155099IPR009057Homeodomain-like
SuperFamilySSF466898.16E-46101222IPR009057Homeodomain-like
PfamPF091112.3E-47103213IPR015195SLIDE domain
Gene3DG3DSA:1.10.10.605.2E-43134234IPR009057Homeodomain-like
SMARTSM007176.2148209IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006338Biological Processchromatin remodeling
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005524Molecular FunctionATP binding
GO:0016818Molecular Functionhydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MFTFKKFIQQ TNQKKDTIGD GDGEDEEVEP LNEEEQEEKE QLLEEGFSTW TRRDFNTFIR  60
ACEKYGRDDI KSIASEMEGK TEEEVQRYAE VFKERYTELN DYDRIIKNIE KGESKISRKD  120
EIMKAIAKKM DRYKNPWLEL KIQYGQNKGK LYNEECDRFL LCMVHKLGYG NWEELKSAFR  180
MSPLFRFDWF VKSRTTQELA RRCDTLIRLV EKENQECDER DRQARKDKKN MTPTKRPSSS  240
SPAMDSPMQT PSKRGRRDGS APLGKRRRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ofc_X7e-752621489280ISWI PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPossesses intrinsic ATP-dependent nucleosome-remodeling activity. Constitutes the catalytic subunit of several complexes capable of forming ordered nucleosome arrays on chromatin in vitro (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020163813.10.0probable chromatin-remodeling complex ATPase chain
SwissprotQ7G8Y31e-126ISW2_ORYSJ; Probable chromatin-remodeling complex ATPase chain
TrEMBLA0A446IN470.0A0A446IN47_TRITD; Uncharacterized protein
STRINGTraes_1AS_0523686DD.10.0(Triticum aestivum)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]