PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1AS_1104A122D.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 154aa    MW: 18048.1 Da    PI: 9.8872
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1AS_1104A122D.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS117.51.7e-362914375187
                   GRAS  75 seelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeelee 160
                            ++ l a++lf  ++P+ ++s+  aNq+Il+  ++  +vHi+Df+is G+QWp+++q +a +++g+p+lRiTg++  ++g    e+++e
  Traes_1AS_1104A122D.1  29 TDWLEAYSLFLATCPFKRVSYNFANQTILDVSQRRPKVHIVDFGISFGFQWPSMIQRFARQEGGAPKLRITGIEVRQPGfrPCEMIKE 116
                            566889*********************************************************************99999999***** PP

                   GRAS 161 tgerLakfAeelgvpfefnvlvakrle 187
                            tg+rLa++A+ +++pf+++ ++++++ 
  Traes_1AS_1104A122D.1 117 TGKRLADYANMFNLPFQYQGIAEDEVL 143
                            ********************8666554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098526.2631154IPR005202Transcription factor GRAS
PfamPF035145.9E-3429143IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MVIVIRDWHF TWWMALRRAC LGSGVRFTTD WLEAYSLFLA TCPFKRVSYN FANQTILDVS  60
QRRPKVHIVD FGISFGFQWP SMIQRFARQE GGAPKLRITG IEVRQPGFRP CEMIKETGKR  120
LADYANMFNL PFQYQGIAED EVLIINCIFR MKNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-17913962197Protein SCARECROW
5b3h_A4e-17913961196Protein SCARECROW
5b3h_D4e-17913961196Protein SCARECROW
5hyz_A4e-17813445180GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198293.15e-71scarecrow-like protein 30
SwissprotO809333e-39SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A446IID88e-71A0A446IID8_TRITD; Uncharacterized protein
STRINGTraes_1AS_1104A122D.11e-112(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137138122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-41GRAS family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]