PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1AS_21ACC7F67.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 250aa    MW: 27845.7 Da    PI: 6.5814
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1AS_21ACC7F67.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.000264670123
                           EEET..TTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                           + Cp   Cgk+F++   Lk Hi+tH
  Traes_1AS_21ACC7F67.1 46 HICPfpACGKRFTSDFKLKCHIKTH 70
                           6799999*****************9 PP
2zf-C2H216.91.8e-05116141123
                            EEET..TTTEEESSHHHHHHHHHH.T CS
                zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                            y+Cp   Cgk + + + L+ H++t H
  Traes_1AS_21ACC7F67.1 116 YVCPyeGCGKAYIHGYKLNLHLKTqH 141
                            99*********************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.43E-92672No hitNo description
Gene3DG3DSA:3.30.160.601.9E-103271IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.914675IPR007087Zinc finger, C2H2
SMARTSM003550.0734670IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804870IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.8E-10109139IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.44E-6111140No hitNo description
SMARTSM003550.0077116141IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.577116146IPR007087Zinc finger, C2H2
PROSITE patternPS000280118141IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MLSYWLIVSL WYILPVLTNK SSELQAFSLD FNLRAHLKTH AVENYHICPF PACGKRFTSD  60
FKLKCHIKTH EKTGSPIAVQ HTPPAEKPQS TIKPSIQATP KRSAPTPPSF SSERPYVCPY  120
EGCGKAYIHG YKLNLHLKTQ HPDHNQENNG RSATPAAGYN YADGGDIAPN PKRSKTNQGH  180
RAPPSNAYNV KVSSRMAVDT SGAKNQWPGK GMYDDDSEET EEDPGGNNVE DGWRYGNQNA  240
DDEETEEDED
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3591910.0AK359191.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1091J18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020180408.11e-165uncharacterized zinc finger protein At4g06634-like
TrEMBLA0A452XKP40.0A0A452XKP4_AEGTS; Uncharacterized protein
STRINGTraes_1AS_21ACC7F67.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20943899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.32e-42C2H2 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]