PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1AS_26CB95294.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family LBD
Protein Properties Length: 136aa    MW: 14403.5 Da    PI: 8.4981
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1AS_26CB95294.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260135.81.6e-42321311100
                 DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                            +CaaCk+lrr+C++ Cvlapyfp ++p+kfa +h++FGasn++kll++lpee+r da+ss+vyeA arardPvyG++g i +lq+q++
  Traes_1AS_26CB95294.1  32 PCAACKILRRRCVDRCVLAPYFPPTDPHKFATAHRVFGASNIIKLLQDLPEEQRADAVSSMVYEAAARARDPVYGSAGAICQLQRQVD 119
                            7*************************************************************************************** PP

                 DUF260  89 qlkaelallkee 100
                             lka+la++++e
  Traes_1AS_26CB95294.1 120 GLKAQLARAQAE 131
                            ********9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.0231132IPR004883Lateral organ boundaries, LOB
PfamPF031953.9E-4232129IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MESSGDTAPL HSSPTPTSPP AMATGAAVVM SPCAACKILR RRCVDRCVLA PYFPPTDPHK  60
FATAHRVFGA SNIIKLLQDL PEEQRADAVS SMVYEAAARA RDPVYGSAGA ICQLQRQVDG  120
LKAQLARAQA ELAAAR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-42161323111LOB family transfactor Ramosa2.1
5ly0_B3e-42161323111LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020176565.12e-93LOB domain-containing protein 1-like
SwissprotQ9SK084e-57LBD11_ARATH; LOB domain-containing protein 11
TrEMBLA0A3B5XUW11e-92A0A3B5XUW1_WHEAT; Uncharacterized protein
TrEMBLA0A446IKX61e-92A0A446IKX6_TRITD; Uncharacterized protein
STRINGTraes_1AS_26CB95294.14e-94(Triticum aestivum)
STRINGTraes_1BS_CE38938A8.17e-93(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26453790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.12e-53LOB domain-containing protein 11
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]