PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1AS_43FB6A3CF.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family LBD
Protein Properties Length: 237aa    MW: 24744 Da    PI: 8.7444
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1AS_43FB6A3CF.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.11.7e-39561561101
                 DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                            +CaaCk+lrr+Ca++C+++p f   +p+kfa vhk+FGasnv+k+l +++e++r da++slvyeA+ r+rdPvyG++g il+lqqq++
  Traes_1AS_43FB6A3CF.1  56 PCAACKLLRRRCAQECPFSPFFSPLEPHKFASVHKVFGASNVSKMLLEVHESQRGDAANSLVYEANLRLRDPVYGCMGAILTLQQQVH 143
                            7*************************************************************************************** PP

                 DUF260  89 qlkaelallkeel 101
                             l+aela++++++
  Traes_1AS_43FB6A3CF.1 144 ALEAELAAVRAQI 156
                            ********99885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.08655156IPR004883Lateral organ boundaries, LOB
PfamPF031952.2E-3956153IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016020Cellular Componentmembrane
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MSTASDWQQD HEVGKKIKSE SAAEADRMMA AARRSSSLPA AGAGPGSTPS FNTMTPCAAC  60
KLLRRRCAQE CPFSPFFSPL EPHKFASVHK VFGASNVSKM LLEVHESQRG DAANSLVYEA  120
NLRLRDPVYG CMGAILTLQQ QVHALEAELA AVRAQILKHR YRPAAAAAAS AVPNVPPSSH  180
ASQLLAAGGH RPAGSLGLAA PAVGPVASAS SSTTVYAAAS SSTDYSSITH ENVPFFG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-405615911114LOB family transfactor Ramosa2.1
5ly0_B7e-405615911114LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0958311e-117FP095831.1 Phyllostachys edulis cDNA clone: bphyst036h20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020167556.11e-164LOB domain-containing protein 15-like
SwissprotQ9AT614e-68LBD13_ARATH; LOB domain-containing protein 13
TrEMBLA0A3B5XWC31e-171A0A3B5XWC3_WHEAT; Uncharacterized protein
TrEMBLA0A446IPY71e-171A0A446IPY7_TRITD; Uncharacterized protein
STRINGTraes_1AS_43FB6A3CF.11e-172(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26303891
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30340.15e-64LOB domain-containing protein 13
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Cho C,Jeon E,Pandey SK,Ha SH,Kim J
    LBD13 positively regulates lateral root formation in Arabidopsis.
    Planta, 2019. 249(4): p. 1251-1258
    [PMID:30627888]