PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1AS_539232667.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family TALE
Protein Properties Length: 98aa    MW: 11739.4 Da    PI: 11.1575
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1AS_539232667.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.21.4e-0847802154
                           HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
               Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54
                           k +yp++e++++L +++gL+ +q+ +WF N+R +
  Traes_1AS_539232667.1 47 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 80
                           569*****************************87 PP
2ELK25.14e-09119119
                    ELK  1 ELKhqLlrKYsgyLgsLkq 19
                           ELKh+L+++Y+++L+++++
  Traes_1AS_539232667.1  1 ELKHELKQGYREKLVDIRE 19
                           9****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512139.132121IPR005539ELK domain
PfamPF037895.7E-5119IPR005539ELK domain
PROSITE profilePS5007111.7422184IPR001356Homeobox domain
SMARTSM003894.9E-102388IPR001356Homeobox domain
SuperFamilySSF466895.56E-172388IPR009057Homeodomain-like
CDDcd000861.35E-82485No hitNo description
Gene3DG3DSA:1.10.10.602.2E-252885IPR009057Homeodomain-like
PfamPF059204.6E-194180IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
ELKHELKQGY REKLVDIREK MLRKRRAGKL PGDTASTLKA WWQAHAKWPY PTEEDKARLV  60
QETGLQLKQI NNWFINQRKR NWHSNPTSSS SDKSKRKR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17797RKRNWHSNPTSSSSDKSKRKR
Functional Description ? help Back to Top
Source Description
UniProtIsoform 3 acts as transcription activator, but isoforms 1 and 2 do not. {ECO:0000269|PubMed:7599652}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3539451e-128AK353945.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1003P14.
GenBankAK3582111e-128AK358211.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1071D15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006659277.13e-60PREDICTED: homeobox protein knotted-1-like 13 isoform X2
RefseqXP_020081320.15e-60homeobox protein knotted-1-like 3
SwissprotQ0J6N42e-59KNOSD_ORYSJ; Homeobox protein knotted-1-like 13
TrEMBLA0A0P0XEB42e-59A0A0P0XEB4_ORYSJ; Os08g0292900 protein (Fragment)
TrEMBLA0A446SUN42e-59A0A446SUN4_TRITD; Uncharacterized protein
TrEMBLB8B9A93e-59B8B9A9_ORYSI; Uncharacterized protein
TrEMBLB9G0513e-59B9G051_ORYSJ; Uncharacterized protein
STRINGTraes_5BS_3B409615C.14e-66(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.22e-55KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]