PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1AS_6517D3C65.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 226aa    MW: 24800.6 Da    PI: 7.7601
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1AS_6517D3C65.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.78.1e-08166190226
                            -S---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                            + + C+++ ++G C+yG +C F+H+
  Traes_1AS_6517D3C65.1 166 GKSDCSYYVKFGSCRYGMNCWFNHP 190
                            6789********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.605164192IPR000571Zinc finger, CCCH-type
SMARTSM003560.0024164191IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-5166190IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-5168191IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MNLANTKAGE IKQLQPEYPR WPSQPDRFYY LKFGSCTSNS EIGEIKQLAP EYQPQPSKPD  60
CTIGDSPVVP SSAGSATPPS LLNLANSETD EIKQPGEVDC PMSDSSTLSS VSITTPPSEN  120
KRRIKKKIIT APMGDPDPSS DGSSAPPANS ETGQKQPEPE YPLRPGKSDC SYYVKFGSCR  180
YGMNCWFNHP LYMHASRGLQ RDNWVGRNSS RASNSSEYKQ VRSLSA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A452XJH41e-104A0A452XJH4_AEGTS; Uncharacterized protein
TrEMBLA0A452XJJ11e-101A0A452XJJ1_AEGTS; Uncharacterized protein
TrEMBLA0A452XJN01e-103A0A452XJN0_AEGTS; Uncharacterized protein
TrEMBLA0A452XJN71e-102A0A452XJN7_AEGTS; Uncharacterized protein
STRINGTraes_1AS_6517D3C65.11e-166(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4953122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.25e-10C3H family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]