PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1AS_673985B1D.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 161aa    MW: 17165.3 Da    PI: 8.4985
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1AS_673985B1D.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.73.1e-1499144147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            +g+W  eEd ll   v+++G+g+W ++a +++  R++kqc++rw + 
  Traes_1AS_673985B1D.1  99 KGSWAMEEDTLLRAKVQEFGKGRWVKVALYLP-DRSGKQCRERWINQ 144
                            799*****************************.***********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.47694149IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.1E-1998149IPR009057Homeodomain-like
SMARTSM007172.6E-1298147IPR001005SANT/Myb domain
PfamPF002497.9E-1499144IPR001005SANT/Myb domain
SuperFamilySSF466898.97E-1699151IPR009057Homeodomain-like
CDDcd001676.35E-13101143No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MAEGSAYFDW DMAASGAGNH LTSFDHGGVA QHFVHIDGGA SAGVVVVSGA GSRASGGIRE  60
MDPTSFLGYG SSNAPAAIAV PARALLRARS SGQGLTRFKG SWAMEEDTLL RAKVQEFGKG  120
RWVKVALYLP DRSGKQCRER WINQLDPNIE VILPNLNFLT S
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188726.11e-70transcription factor MYB46-like
TrEMBLA0A446INT91e-112A0A446INT9_TRITD; Uncharacterized protein
STRINGTraes_1AS_673985B1D.11e-115(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2265446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23290.18e-14myb domain protein 70
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]