PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1AS_97CE311BA.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GATA
Protein Properties Length: 147aa    MW: 16214.2 Da    PI: 10.1298
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1AS_97CE311BA.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA62.84e-202357135
                   GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                           C+ C+tt+Tp+WR+gp g++tLCnaCG++yrkk++
  Traes_1AS_97CE311BA.2 23 CVECRTTTTPMWRSGPTGPRTLCNACGIRYRKKRR 57
                           ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.6E-161767IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.75E-142059No hitNo description
Gene3DG3DSA:3.30.50.101.1E-152158IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.6642353IPR000679Zinc finger, GATA-type
PfamPF003209.8E-182357IPR000679Zinc finger, GATA-type
CDDcd002022.95E-142358No hitNo description
PROSITE patternPS0034402348IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MDSSHHKVIG VAPAAGEGGR MCCVECRTTT TPMWRSGPTG PRTLCNACGI RYRKKRRQEL  60
GLDNKPQNQQ LNQQQQHQQQ QQQQQQQQRE DHGEATSAVK DSSSSSNNKS SNLQVVKKKR  120
TVSMGVEEAA FLLMALSSSS TPPLLHG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2506743e-97AK250674.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf93f15, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020179907.12e-77GATA transcription factor 17-like
TrEMBLA0A3B5XVV29e-99A0A3B5XVV2_WHEAT; Uncharacterized protein
TrEMBLA0A446INV09e-99A0A446INV0_TRITD; Uncharacterized protein
STRINGTraes_1AS_97CE311BA.21e-105(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67212854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26930.11e-18GATA transcription factor 23
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]