PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1AS_CA75913B6.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HB-other
Protein Properties Length: 73aa    MW: 8128.15 Da    PI: 10.4678
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1AS_CA75913B6.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox51.91.3e-1611551256
                           HHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox 12 leeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                           + +Le++F+k+++p++++ + L++++gLt +q+k+WFq rRa+ k
  Traes_1AS_CA75913B6.1 11 ILALEAAFKKCPHPDETQVANLSRETGLTPQQIKYWFQTRRAQIK 55
                           789***************************************977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003895.3E-11561IPR001356Homeobox domain
SuperFamilySSF466898.13E-16969IPR009057Homeodomain-like
CDDcd000865.65E-141155No hitNo description
PfamPF000465.2E-141155IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-151155IPR009057Homeodomain-like
PROSITE profilePS5007113.0211457IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 73 aa     Download sequence    Send to blast
MDGHRCGARR ILALEAAFKK CPHPDETQVA NLSRETGLTP QQIKYWFQTR RAQIKGSSSN  60
MRPPTQGSSS SDP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010268322.13e-16PREDICTED: homeobox-leucine zipper protein HDG11-like isoform X2
SwissprotQ69T581e-16ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8
TrEMBLA0A452XN113e-46A0A452XN11_AEGTS; Uncharacterized protein
STRINGTraes_1AS_CA75913B6.11e-48(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2510425
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.12e-18homeodomain GLABROUS 11
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]