PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_1AS_F3E49A47C.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

GRAS

Protein Properties

Length: 257aa MW: 30036.7 Da PI: 9.1037

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_1AS_F3E49A47C.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	219.1	2.3e-67	1	249	128	374
GRAS 128 LlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrl 213 ++q +a+++eg+p+lRiTg++ p++g e++eetg+rLa++A+ ++vpf+++ ++a+r+e++++e+L++++gE+l++n++l++++l Traes_1AS_F3E49A47C.1 1 MIQRFAKQEEGAPKLRITGIDIPQPGlrPCEMIEETGKRLADYANMFKVPFQYQGIAASRWETIKIEDLNIEEGEVLIINCMLRMKNL 88 59**********************9999****************************************************** PP GRAS 214 ldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301 +e+ +++s+rdev+k++++++Pk+++ + ++s+ F +rf e + +ys++fd+l+a++pr++e+r+++Er+l+gr++ + +ace Traes_1AS_F3E49A47C.1 89 GHETIAINSTRDEVIKTMRRMNPKIFISGTVNGLRSSPFFIQRFKEVMFHYSSMFDMLDANIPRDNEARKTIERVLFGRDALKSIACE 176 ************************************************************************************ PP GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ae ++r+e++++W++r+ +aGF+++p++ + k++ + + +++ e+ g+l++gWk+r ++++S W+ Traes_1AS_F3E49A47C.1 177 DAEWTKRRESYRQWQARFLKAGFQQLPVDPAILKKIVQKKNSLYHEEFFAVEDCGWLLQGWKGRVIYAISKWK 249 ********************************99999999899999********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	8.0E-65	1	249	IPR005202	Transcription factor GRAS
PROSITE profile	PS50985	36.895	1	229	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MIQRFAKQEE GAPKLRITGI DIPQPGLRPC EMIEETGKRL ADYANMFKVP FQYQGIAASR 60 WETIKIEDLN IEEGEVLIIN CMLRMKNLGH ETIAINSTRD EVIKTMRRMN PKIFISGTVN 120 GLRSSPFFIQ RFKEVMFHYS SMFDMLDANI PRDNEARKTI ERVLFGRDAL KSIACEDAEW 180 TKRRESYRQW QARFLKAGFQ QLPVDPAILK KIVQKKNSLY HEEFFAVEDC GWLLQGWKGR 240 VIYAISKWKP DETYDGQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-19	1	249	127	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020198291.1	1e-158	scarecrow-like protein 9
Refseq	XP_020198297.1	1e-157	scarecrow-like protein 34
TrEMBL	A0A446IIC9	0.0	A0A446IIC9_TRITD; Uncharacterized protein
STRING	Traes_1AS_F3E49A47C.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1505	38	118

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	2e-88	GRAS family protein

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]