PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_1BL_0E29B6971.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HB-other

Protein Properties

Length: 45aa MW: 5366.12 Da PI: 9.9225

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_1BL_0E29B6971.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	31.7	2.5e-10	2	33	23	54
SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 23 rypsaeereeLAkklgLterqVkvWFqNrRak 54 ryps ++ LA+++gL+ +qV++WF N R + Traes_1BL_0E29B6971.1 2 RYPSDVDKHILARQTGLSRSQVSNWFINARVR 33 8*****************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	11.774	1	37	IPR001356	Homeobox domain
CDD	cd00086	5.00E-9	1	38	No hit	No description
SuperFamily	SSF46689	6.84E-14	2	43	IPR009057	Homeodomain-like
Pfam	PF05920	4.0E-14	3	33	IPR008422	Homeobox KN domain
Gene3D	G3DSA:1.10.10.60	7.5E-19	3	43	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 45 aa Download sequence Send to blast
SRYPSDVDKH ILARQTGLSR SQVSNWFINA RVRLWKPMVE EMYAE

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269\|PubMed:12244239, ECO:0000269\|PubMed:17693535, ECO:0000269\|PubMed:22786869}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK358409	2e-61	AK358409.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1076A02.
GenBank	AK359112	2e-61	AK359112.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1089L06.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025793881.1	2e-24	homeobox protein BEL1 homolog
Swissprot	Q38897	1e-23	BEL1_ARATH; Homeobox protein BEL1 homolog
TrEMBL	M0YWS5	6e-26	M0YWS5_HORVV; Uncharacterized protein
STRING	MLOC_73862.2	1e-26	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41410.1	6e-26	TALE family protein

Publications ? help Back to Top
Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules. Development, 2016. 143(3): p. 422-6 [PMID:26700684] Lozano-Sotomayor P, et al. Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana. Plant J., 2016. 88(3): p. 437-451 [PMID:27402171]