PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_1BL_0F9F21D68.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

NAC

Protein Properties

Length: 59aa MW: 6599.36 Da PI: 6.4915

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_1BL_0F9F21D68.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	38.2	4.3e-12	3	59	30	82
NAM 30 leevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgy 82 +e+vi+ vd+++++Pw+Lp+ +++++ + w++F+ r+ ++a+g r++r+t sgy Traes_1BL_0F9F21D68.1 3 IERVIPVVDVCSLDPWQLPEvhrgACAGHGEPWFYFCARQDREARGGRPSRTTPSGY 59 5578************95456544557889********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	16.068	1	59	IPR003441	NAC domain
SuperFamily	SSF101941	1.7E-13	5	59	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 59 aa Download sequence Send to blast
GDIERVIPVV DVCSLDPWQL PEVHRGACAG HGEPWFYFCA RQDREARGGR PSRTTPSGY

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK359954	7e-74	AK359954.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1107F05.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020158921.1	2e-36	NAC domain-containing protein 90-like
Swissprot	Q9FMR3	3e-16	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A452Z7N9	2e-35	A0A452Z7N9_AEGTS; Uncharacterized protein
STRING	Traes_1AL_C76BCC7EC.1	1e-35	(Triticum aestivum)
STRING	Traes_1BL_0F9F21D68.1	6e-37	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1005	38	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	1e-18	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]