PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1BL_5C07BE2D0.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family Trihelix
Protein Properties Length: 442aa    MW: 50247 Da    PI: 6.4773
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1BL_5C07BE2D0.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix77.22.5e-24120216186
               trihelix   1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sesss 77 
                            +Wt ++v++Li+a ++++e+ +++           +kk++W+++sk+m erg+++sp+qC++k+++lnkryk+++++ +++t ++++ 
  Traes_1BL_5C07BE2D0.1 120 KWTGSMVKLLITAASYTGEDPGADLgggrrnitvmQKKGKWKAISKVMGERGCNVSPQQCEDKFNDLNKRYKRLTDILGRGTaCNVVD 207
                            7*********************8744455667777**********************************************5489988 PP

               trihelix  78 tcpyfdqle 86 
                            + +++d ++
  Traes_1BL_5C07BE2D0.1 208 NPALLDCMN 216
                            888888775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.9E-18118239No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MDRSNLPPGN TTQGAPYGSL NVHGNSMQMH PPSSGKHLFN QSQMPGSFTM PINRATEHDN  60
PGSGFQFVEH GKKDHHQQQQ QHNHLIKNSI SDDEEHDMTE DTTDAQSGKG KKGSAWHRMK  120
WTGSMVKLLI TAASYTGEDP GADLGGGRRN ITVMQKKGKW KAISKVMGER GCNVSPQQCE  180
DKFNDLNKRY KRLTDILGRG TACNVVDNPA LLDCMNNLSD KMKEDARKIL NSKHLFYEMM  240
CSYHNNNRVN LPEDPALQHS LQVALRCKEE HDPRRDASGD AEEDDHNADS DYEDHDEEHQ  300
AVHHSMRDPP MNKRMCHALD HGDVGFLTSS SNDGSGSLDP HGIALDINKV FPDGTNLSVV  360
RKELASQAIE LRKRQLQIEA QELEVTEQRL KWERFKRKKD REIERMESEN EEMMLENKRL  420
ELQLKHKELE VELKLKGNPD HE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3712000.0AK371200.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2127P16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020187300.10.0stress response protein NST1-like
TrEMBLA0A3B5Z6Z50.0A0A3B5Z6Z5_WHEAT; Uncharacterized protein
STRINGTraes_1BL_5C07BE2D0.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29203886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.14e-79sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]