PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_1BL_6F6239DF9.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

NF-YB

Protein Properties

Length: 148aa MW: 16608.2 Da PI: 5.9777

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_1BL_6F6239DF9.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	166.7	2.9e-52	14	105	2	93
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkk 89 +eq+rflPian++rim++ +P+n+ki+kdake++qecvsefisf+tseasdkc +ekrktingddl+w+++tlGfedyveplk+ylk Traes_1BL_6F6239DF9.2 14 KEQERFLPIANIGRIMRRGVPENGKIAKDAKESIQECVSEFISFITSEASDKCMKEKRKTINGDDLIWSMGTLGFEDYVEPLKLYLKL 101 89************************************************************************************ PP NF-YB 90 yrel 93 yre+ Traes_1BL_6F6239DF9.2 102 YREV 105 97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	3.5E-46	11	104	IPR009072	Histone-fold
SuperFamily	SSF47113	2.75E-36	16	105	IPR009072	Histone-fold
Pfam	PF00808	2.4E-26	19	83	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	2.5E-19	47	65	No hit	No description
PROSITE pattern	PS00685	0	50	66	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	2.5E-19	66	84	No hit	No description
PRINTS	PR00615	2.5E-19	85	103	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 148 aa Download sequence Send to blast
MSEAVGTPES GGAKEQERFL PIANIGRIMR RGVPENGKIA KDAKESIQEC VSEFISFITS 60 EASDKCMKEK RKTINGDDLI WSMGTLGFED YVEPLKLYLK LYREVIFIHS FVPLFLCCLC 120 YACAACERNS EFGVRRRFGG YSIGVGEL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_B	1e-43	14	104	4	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A	1e-43	14	104	4	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. May regulate the expression of photosynthetic genes, and may be involved in chloroplast and amyloplast development. {ECO:0000269\|PubMed:14617083}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM078742	1e-172	KM078742.1 Triticum aestivum CCAAT-binding transcription factor A (NFYB-D11) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020174231.1	5e-71	nuclear transcription factor Y subunit B-4-like
Swissprot	Q65XK1	1e-58	NFYB4_ORYSJ; Nuclear transcription factor Y subunit B-4
TrEMBL	A0A446KCW5	1e-104	A0A446KCW5_TRITD; Uncharacterized protein
STRING	Traes_1BL_6F6239DF9.2	1e-105	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP201	38	331

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53340.1	6e-55	nuclear factor Y, subunit B10

Publications ? help Back to Top
Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]