PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1BL_80DD53F05.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family CPP
Protein Properties Length: 236aa    MW: 26684.6 Da    PI: 8.9693
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1BL_80DD53F05.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR253.7e-084311340
                    TCR 13 ClkkYCeCfaagkkCseeCkCedCkNke 40
                           C+ +YC Cfa g +Cse+C C  C+Nk 
  Traes_1BL_80DD53F05.2  4 CVCRYCPCFAGGGYCSEKCGCVPCFNKA 31
                           999***********************97 PP
2TCR50.34.6e-1679115339
                    TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                            ++gCnCkks+ClkkYC+C+++g+ Cs  C+CedCkN 
  Traes_1BL_80DD53F05.2  79 RRGCNCKKSSCLKKYCDCYQDGTGCSLFCRCEDCKNP 115
                            589*********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163425.7271117IPR005172CRC domain
SMARTSM011140.0061333IPR033467Tesmin/TSO1-like CXC domain
PfamPF036387.6E-5430IPR005172CRC domain
SMARTSM011146.5E-1577118IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.4E-1180114IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MIVCVCRYCP CFAGGGYCSE KCGCVPCFNK ADFAETVQTT RKVLLSRQKR MSLKINRRLE  60
ANAETMEDAH NSSSSTPPRR GCNCKKSSCL KKYCDCYQDG TGCSLFCRCE DCKNPYGKNE  120
GFMADESKRF IYTGADLDHS EDEHDFIVER SPRLQSPISK ESSFQHTPPR SKASSRDTHL  180
LPQVLSQWXX XXXXXXXXXX XXXXXXRTTR ARATSGSWRS TRSRRTPTAS RGASRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3678660.0AK367866.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2063M24.
GenBankAK3745570.0AK374557.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3069A23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020157750.11e-134protein tesmin/TSO1-like CXC 3
TrEMBLT1LYG71e-135T1LYG7_TRIUA; Uncharacterized protein
STRINGTraes_1BL_80DD53F05.21e-157(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101592937
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22760.15e-33Tesmin/TSO1-like CXC domain-containing protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]