PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1BL_8709BB152.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family SBP
Protein Properties Length: 745aa    MW: 82240.8 Da    PI: 7.4273
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1BL_8709BB152.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP112.13.3e-3555130176
                            --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
                    SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                            +Cqv+gCead+ e+k yh+rh+vC  +++a++v+++g ++r+CqqC++fh l +fDe+krsCrr+L++hn+rrr+k
  Traes_1BL_8709BB152.2  55 RCQVPGCEADIRELKGYHKRHRVCLRCAHASAVMIDGAQKRYCQQCGKFHILLDFDEDKRSCRRKLERHNKRRRRK 130
                            6************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.9E-2748117IPR004333Transcription factor, SBP-box
PROSITE profilePS5114129.44553130IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.96E-3354133IPR004333Transcription factor, SBP-box
PfamPF031108.4E-2756130IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055070Biological Processcopper ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 745 aa     Download sequence    Send to blast
MAAAAEVEEV AAEVLAGPRK KPRAGSRGSS GAVVKIGGAG GGSGVAGRGG AAEMRCQVPG  60
CEADIRELKG YHKRHRVCLR CAHASAVMID GAQKRYCQQC GKFHILLDFD EDKRSCRRKL  120
ERHNKRRRRK PDSKGTLEKE IDEQLDLSAD GSGSGEIREE NIDGASCDML ETVLSNKVLD  180
RETPVGSEDA LSSPTCTQLS LQNDRSKSIV TFAASAEACL GAKQENAKLT TSPVHDSRSA  240
YSSSCPTGRI SFKLYDWNPA EFPRRLRNQI FEWLSSMPVE LEGYIRPGCT ILTVFIAMPQ  300
HMWDKLSEDT ANLVRNLVNA PSSLLLGKGA FFVHVNNTIF QVLKDGATLM STRLEVQAPR  360
IHCVHPTWFE AGKPIELLLC GSSLDQPKFR SLLSFDGEYL KHDCCRLTSR EIFGCVKNGA  420
PTFDSHHEVF RINITQTKPD THGPGFVEVE NVFGLSNFVP ILFGSKQLCF ELERIQDVLC  480
GSSKYKSTNG EFPGITSDRC EHWKLQQTAM SGFLIEIGWL IKKPSPDEFK NLLSKTNIKR  540
WICLLEFLIQ NNFINVLEMI VKSSDNIIGS EILSNLESGR LEDHVTAFLG YVRHARTIVD  600
QRAKHNEETQ LQTRWCGDSV SDQPSLGTSV PLGKENVAAS DDFCLPSTNA ECEAEESVPL  660
VTNEAVSHRQ CRAPEMNARW LNPALVAPFP SGMMRTRLVA TVAVAAILCF TACVALFHPG  720
RVGVLAAPVK RYLFSDCPPW HHSGC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul5_A2e-3855137587squamosa promoter binding protein-like 7
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112130KRSCRRKLERHNKRRRRKP
2116128RRKLERHNKRRRR
3123130NKRRRRKP
4124129KRRRRK
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00604PBMTransfer from AT5G18830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2503120.0AK250312.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf72c21, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020161545.10.0squamosa promoter-binding-like protein 9
SwissprotQ6I5760.0SPL9_ORYSJ; Squamosa promoter-binding-like protein 9
TrEMBLA0A446K1850.0A0A446K185_TRITD; Uncharacterized protein
STRINGTraes_1BL_8709BB152.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69223344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.21e-136squamosa promoter binding protein-like 7
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]