PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1BL_8AC21563E.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family YABBY
Protein Properties Length: 219aa    MW: 22687.3 Da    PI: 7.9382
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1BL_8AC21563E.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY78.22.6e-244198461
                  YABBY  4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaes 61
                              seq+Cyv+C fC+t+l+vsvPs+slfk+vtvrCGhC+sll+v+++     ++++ 
  Traes_1BL_8AC21563E.1 41 EAPSEQLCYVHCHFCDTVLVVSVPSSSLFKTVTVRCGHCSSLLTVDMRGLLFPTTTTT 98
                           5689******************************************998775554444 PP
2YABBY39.52.1e-12191219107134
                  YABBY 107 eevprvpp.virPPekrqrvPsaynrfik 134
                            e +pr+ p v+rPPekrqrvPsaynrfik
  Traes_1BL_8AC21563E.1 191 EPSPRTNPvVNRPPEKRQRVPSAYNRFIK 219
                            5567887769******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.0E-3343219IPR006780YABBY protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MSSSSSSGAS AAFTPVSQQQ QQMASESLSS ELQPPASMQP EAPSEQLCYV HCHFCDTVLV  60
VSVPSSSLFK TVTVRCGHCS SLLTVDMRGL LFPTTTTTVA AESAASAVTT TTSPPPAAAA  120
HHGQFHYPSS LNLTPGNPPR HSLLDEISSA NPSLQLLDQH GLGGLIAAAG GXAAPAPLPP  180
PPVAAGKGGK EPSPRTNPVV NRPPEKRQRV PSAYNRFIK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3302280.0AY330228.1 Triticum aestivum YABBY protein (YAB1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020178920.11e-114protein YABBY 3-like
SwissprotQ8L5562e-51YAB3_ORYSJ; Protein YABBY 3
TrEMBLA0A3B5YXT91e-114A0A3B5YXT9_WHEAT; Uncharacterized protein
TrEMBLA0A446JW811e-114A0A446JW81_TRITD; Uncharacterized protein
TrEMBLA0A446JW941e-115A0A446JW94_TRITD; Uncharacterized protein
STRINGTraes_1BL_8AC21563E.11e-154(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144538121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00180.14e-14YABBY family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]