PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1BL_8D7875F34.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 247aa    MW: 27746.6 Da    PI: 6.5041
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1BL_8D7875F34.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.21.4e-081171026
                           GGTS--TTTTT-SS-SS CS
                zf-CCCH 10 artGtCkyGdrCkFaHg 26
                           +rtG C+yG +C+F+H+
  Traes_1BL_8D7875F34.1  1 MRTGACRYGKNCHFNHP 17
                           8***************9 PP
2zf-CCCH30.37e-10195220227
                            -S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                            + + C+f++r+G Ck+ + C+++H++
  Traes_1BL_8D7875F34.1 195 GKPDCPFYMRFGDCKFASACNYHHPK 220
                            7899********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF006423.5E-6117IPR000571Zinc finger, CCCH-type
SMARTSM0035630118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.925119IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.455193221IPR000571Zinc finger, CCCH-type
SMARTSM003560.0016193220IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-6195220IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.63E-5198223IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MRTGACRYGK NCHFNHPDHV IDAQFNPPTG WEDNALQMEK SSDHTLDETS RMKKSSDDAT  60
FDDRSDMKKS SDDAALDDRS HLKKPSDGAI VDDTSYSKKS SDNDNSSSSG VLPPSIFRML  120
LPPPKVLPST EGKAKKKSDW SSDDSDGCCS ADSSDGPLCK QGEHVDYAER PGRPEYHHPK  180
QSKDKEEVNY PERPGKPDCP FYMRFGDCKF ASACNYHHPK DKYPAGRPDE PECPFLMKRG  240
YFKLRAQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3692021e-133AK369202.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2086J19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020181184.11e-145uncharacterized protein LOC109766829
TrEMBLA0A446JFH31e-158A0A446JFH3_TRITD; Uncharacterized protein
TrEMBLA0A446JFI91e-158A0A446JFI9_TRITD; Uncharacterized protein
STRINGTraes_1BL_8D7875F34.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147291820
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.24e-12C3H family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]