PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1BL_8E4911A3C.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 142aa    MW: 15709.6 Da    PI: 8.958
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1BL_8E4911A3C.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.96.8e-20758155
                    AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                           ++y+GVr ++ +g+++AeIrdp  +   +r++lg+f+taeeAa+a+++a+ + +g
  Traes_1BL_8E4911A3C.1  7 TKYRGVRTRP-WGKFAAEIRDPERG--GARVWLGTFDTAEEAARAYDRAAFAQRG 58
                           69*****999.**********8333..4***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.0E-14758IPR001471AP2/ERF domain
CDDcd000183.96E-29766No hitNo description
SMARTSM003801.6E-32872IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-23866IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.3E-31866IPR001471AP2/ERF domain
PROSITE profilePS5103223.815866IPR001471AP2/ERF domain
PRINTSPR003671.3E-11920IPR001471AP2/ERF domain
PRINTSPR003671.3E-113248IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MEDDKKTKYR GVRTRPWGKF AAEIRDPERG GARVWLGTFD TAEEAARAYD RAAFAQRGAT  60
AVLNFPGEAG GAFGSSSSAP AGSGAGTGRG RGGTEKIELE YLDDSLLDEL LDDSKYEEMT  120
YTNTYFFRKK IFVIKMNKKR CI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-28810614114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002464556.22e-46ethylene-responsive transcription factor ERF096
SwissprotQ9LTC52e-36ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A446JSC62e-98A0A446JSC6_TRITD; Uncharacterized protein
STRINGTraes_1BL_8E4911A3C.14e-99(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.16e-20ERF family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]