PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1BL_9636192C8.1
Common NameTamyb2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 38aa    MW: 4407.98 Da    PI: 8.5668
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1BL_9636192C8.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.69e-11638135
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgR 35
                           rg ++++E++ ++ +++ lG++ W+ Ia++++ gR
  Traes_1BL_9636192C8.1  6 RGCFSQQEEDHIIALHQILGNR-WSQIASHLP-GR 38
                           899*******************.*********.98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.859138IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.0E-14138IPR009057Homeodomain-like
SuperFamilySSF466895.71E-9238IPR009057Homeodomain-like
PfamPF002495.2E-9638IPR001005SANT/Myb domain
CDDcd001672.57E-5938No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 38 aa     Download sequence    Send to blast
RPDLKRGCFS QQEEDHIIAL HQILGNRWSQ IASHLPGR
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2521458e-57AB252145.1 Triticum aestivum Tamyb2 mRNA for myb-related protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020180810.14e-19myb-related protein Hv33
SwissprotP200274e-20MYB3_HORVU; Myb-related protein Hv33
TrEMBLA0A446K8S94e-19A0A446K8S9_TRITD; Uncharacterized protein
STRINGEMT062116e-19(Aegilops tauschii)
STRINGTraes_1BL_9636192C8.12e-20(Triticum aestivum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.19e-17myb domain protein 46