PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1BL_A44464337.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 72aa    MW: 8482.9 Da    PI: 10.4764
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1BL_A44464337.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.49.2e-1041632346
                           -HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqk 46
                           +W+ Ia++++ gRt++++k++w++
  Traes_1BL_A44464337.1 41 RWSQIASHLP-GRTDNEIKNFWNS 63
                           7*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-132669IPR009057Homeodomain-like
PROSITE profilePS500906.5282665IPR017877Myb-like domain
SuperFamilySSF466894.13E-93970IPR009057Homeodomain-like
CDDcd001671.05E-64162No hitNo description
PfamPF002491.9E-74163IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 72 aa     Download sequence    Send to blast
RYGRPPAQCI RFVFFSHCGE RGRTRDNMLM HVVSCLVCAC RWSQIASHLP GRTDNEIKNF  60
WNSCIKKKLR QQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2506024e-48AK250602.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf92j17, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A452ZQQ02e-21A0A452ZQQ0_AEGTS; Uncharacterized protein
STRINGTraes_1BL_A44464337.13e-48(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5509122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.18e-16myb domain protein 67
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]