PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1BL_DF66FC4FE.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 57aa    MW: 6358.18 Da    PI: 7.8077
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1BL_DF66FC4FE.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS28.61.7e-09154319373
                   GRAS 319 leeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                            +++ GF  + +++++++++++ll++++  g+ v+ e++ lv++Wk+++ v+++aW
  Traes_1BL_DF66FC4FE.1   1 MRRKGFAGAGFGQDEVAEVRHLLSEHA-TGWGVKREEDMLVFTWKGHAAVFTTAW 54 
                            8999***********************.99************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035145.9E-7154IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 57 aa     Download sequence    Send to blast
MRRKGFAGAG FGQDEVAEVR HLLSEHATGW GVKREEDMLV FTWKGHAAVF TTAWAPN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020154951.11e-31scarecrow-like protein 32
SwissprotQ9SN226e-15SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A446K5Z12e-33A0A446K5Z1_TRITD; Uncharacterized protein
STRINGTraes_1BL_DF66FC4FE.12e-34(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122273238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.12e-17GRAS family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]