PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1BS_05948C723.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family M-type_MADS
Protein Properties Length: 76aa    MW: 8294.4 Da    PI: 10.6176
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1BS_05948C723.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF626.7e-201155347
                           --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
                 SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                           +e+   rqvtfskR+ g+ KKA+EL vLC a  av++fs+ gk +
  Traes_1BS_05948C723.1 11 VEDRESRQVTFSKRKSGLWKKASELAVLCRASLAVVVFSEAGKGF 55
                           588999***********************************9855 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.2E-23160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.478161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.11E-22266IPR002100Transcription factor, MADS-box
PRINTSPR004048.6E-18323IPR002100Transcription factor, MADS-box
PfamPF003194.8E-221157IPR002100Transcription factor, MADS-box
PRINTSPR004048.6E-182338IPR002100Transcription factor, MADS-box
PRINTSPR004048.6E-183859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 76 aa     Download sequence    Send to blast
KGRQRRENRL VEDRESRQVT FSKRKSGLWK KASELAVLCR ASLAVVVFSE AGKGFAFGSP  60
STDAVLGYAG YGEANV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020187835.12e-41uncharacterized protein LOC109773555
SwissprotO647039e-20AGL29_ARATH; Agamous-like MADS-box protein AGL29
TrEMBLA0A3B5YTG45e-46A0A3B5YTG4_WHEAT; Uncharacterized protein
TrEMBLA0A446JK895e-46A0A446JK89_TRITD; Uncharacterized protein
STRINGTraes_1BS_05948C723.11e-47(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28333088
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.14e-22AGAMOUS-like 29
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]