PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1BS_060C24872.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 113aa    MW: 13008.8 Da    PI: 9.9686
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1BS_060C24872.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.17.5e-17243548
                           -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           T+ E+ l++++++++G++ W++Iar+++ gRt++++k++w++++
  Traes_1BS_060C24872.1  2 TPHEERLILELHARWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 43
                           9*****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001674.42E-12143No hitNo description
PROSITE profilePS5129424.155147IPR017930Myb domain
SMARTSM007172.3E-11145IPR001005SANT/Myb domain
SuperFamilySSF466892.26E-13250IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-20244IPR009057Homeodomain-like
PfamPF002491.4E-14242IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 113 aa     Download sequence    Send to blast
MTPHEERLIL ELHARWGNRW SRIARKLPGR TDNEIKNYWR THMRKKAQER KRSVSPSPSS  60
SSVTYQSIQP QTPSIMGIGE QELHGGSSCI TSILKGTPAD MDGYLMDQIW MEI
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0095360.0BT009536.1 Triticum aestivum clone wr1.pk0139.g11:fis, full insert mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020201689.15e-77myb-related protein MYBAS2-like isoform X3
RefseqXP_020201690.15e-77myb-related protein MYBAS2-like isoform X3
SwissprotQ4JL766e-55MYBA2_ORYSJ; Myb-related protein MYBAS2
TrEMBLA0A3B6KCK92e-76A0A3B6KCK9_WHEAT; Uncharacterized protein
TrEMBLA0A3B6KDU03e-76A0A3B6KDU0_WHEAT; Uncharacterized protein
TrEMBLA0A446SS173e-76A0A446SS17_TRITD; Uncharacterized protein
TrEMBLA0A446SS822e-76A0A446SS82_TRITD; Uncharacterized protein
TrEMBLA0A446SS865e-76A0A446SS86_TRITD; Uncharacterized protein
STRINGTraes_1BS_060C24872.16e-79(Triticum aestivum)
STRINGTraes_5AS_7D519210E.22e-77(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.12e-31myb domain protein 59
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]