PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1BS_1F372BED3.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 212aa    MW: 23062.5 Da    PI: 9.2353
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1BS_1F372BED3.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH345.1e-112974454
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                            h+e ErrRR+riN+ +++Lr+++P a       ++Ka+ L  +v+ +k+L
  Traes_1BS_1F372BED3.1 29 VHSESERRRRERINTHLATLRRMIPDA-----NQMDKATLLACVVNQVKEL 74
                           59************************8.....4799999998888877776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-131680IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.4182574IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.9E-122980IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-82974IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-113180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550211.65E-6113176No hitNo description
Gene3DG3DSA:3.30.70.2602.6E-5116157No hitNo description
CDDcd048733.03E-5116158No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MATCQAPTSA PELSSSSGRS ATEVRSLKVH SESERRRRER INTHLATLRR MIPDANQMDK  60
ATLLACVVNQ VKELKRKATE TTRLQATVPI PPEANEITVQ CYTAASDNRT TCIHATVSCD  120
DRPGLFVGLT GAFRGLGLRV LRTETASLGG RASHLFVLCK EGRDVGAGMR ALEGAVRQAM  180
AEVAFPEMVC GGSSWSKRER ILEGRCPVMY SV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13338ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3685370.0AK368537.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2075J21.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020151484.11e-131transcription factor AIG1-like
TrEMBLA0A3B5YTV41e-153A0A3B5YTV4_WHEAT; Uncharacterized protein
TrEMBLA0A446JP851e-153A0A446JP85_TRITD; Uncharacterized protein
STRINGTraes_1BS_1F372BED3.11e-154(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33473678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.15e-25bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]