PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_1BS_22E395F75.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C2H2

Protein Properties

Length: 190aa MW: 20182.9 Da PI: 6.7776

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_1BS_22E395F75.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.6	0.0004	39	61	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+++F++ L H +H Traes_1BS_22E395F75.1 39 FVCKTCDRVFPSFQALGGHRASH 61 89**********99999998887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.0E-8	37	99	No hit	No description
Pfam	PF13912	1.7E-12	38	63	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.39	39	66	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.12	39	61	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	41	61	IPR007087	Zinc finger, C2H2
Pfam	PF13912	2.0E-8	77	101	IPR007087	Zinc finger, C2H2
SMART	SM00355	2.5	77	99	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	79	99	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MMKRFAFEER DMARMLLLVS REQAMPVAAR GDRAPERAFV CKTCDRVFPS FQALGGHRAS 60 HKKPRLDGDG DFKPKMHGCS ICGLEFAVGQ ALGGHMRRHR AMVAGGDGVT AGPPAKTTDN 120 LEDSNNAVVV VGSGGGIKPG LWLDLNHPPC DDVGGSDVDH GECGHDTAAA GYTFHQFLDA 180 GAMAVDCVGY

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in oxidative stress response. {ECO:0000269\|PubMed:14722088}.
UniProt	Transcriptional repressor involved in light acclimation, cold and oxidative stress responses. May regulate a collection of transcripts involved in response to high-light, cold and oxidative stress. {ECO:0000269\|PubMed:11069694, ECO:0000269\|PubMed:14722088, ECO:0000269\|PubMed:15634197, ECO:0000269\|PubMed:16183833}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By H(2)O(2), cold, drought, cold or heat stresses, wounding, cucumber mosaic virus (CMV), exposure to high-intensity light and low-oxygen conditions in roots. {ECO:0000269\|PubMed:12368499, ECO:0000269\|PubMed:14722088, ECO:0000269\|PubMed:15634197, ECO:0000269\|PubMed:16183833, ECO:0000269\|PubMed:18201973, ECO:0000269\|PubMed:18922600}.
UniProt	INDUCTION: By H(2)O(2), heat stress, wounding and cucumber mosaic virus (CMV). {ECO:0000269\|PubMed:14722088, ECO:0000269\|PubMed:18922600}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK371765	1e-122	AK371765.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2141C12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020201498.1	1e-121	zinc finger protein ZAT12-like
Swissprot	Q42410	1e-22	ZAT12_ARATH; Zinc finger protein ZAT12
Swissprot	Q42453	1e-22	ZAT7_ARATH; Zinc finger protein ZAT7
TrEMBL	A0A3B5YSK5	1e-136	A0A3B5YSK5_WHEAT; Uncharacterized protein
STRING	Traes_1BS_22E395F75.1	1e-137	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP501	37	157

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G59820.1	7e-25	C2H2 family protein

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Shi H,Chan Z The cysteine2/histidine2-type transcription factor ZINC FINGER OF ARABIDOPSIS THALIANA 6-activated C-REPEAT-BINDING FACTOR pathway is essential for melatonin-mediated freezing stress resistance in Arabidopsis. J. Pineal Res., 2014. 57(2): p. 185-91 [PMID:24962049] Munekage YN,Inoue S,Yoneda Y,Yokota A Distinct palisade tissue development processes promoted by leaf autonomous signalling and long-distance signalling in Arabidopsis thaliana. Plant Cell Environ., 2015. 38(6): p. 1116-26 [PMID:25293694] Le CT, et al. ZINC FINGER OF ARABIDOPSIS THALIANA12 (ZAT12) Interacts with FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR (FIT) Linking Iron Deficiency and Oxidative Stress Responses. Plant Physiol., 2016. 170(1): p. 540-57 [PMID:26556796] Ben Daniel BH, et al. Identification of novel transcriptional regulators of Zat12 using comprehensive yeast one-hybrid screens. Physiol Plant, 2016. 157(4): p. 422-41 [PMID:26923089] Tang Y, et al. Oxidative stress-induced toxicity of CuO nanoparticles and related toxicogenomic responses in Arabidopsis thaliana. Environ. Pollut., 2016. 212: p. 605-614 [PMID:27016889] Corrales AR, et al. Multifaceted role of cycling DOF factor 3 (CDF3) in the regulation of flowering time and abiotic stress responses in Arabidopsis. Plant Cell Environ., 2017. 40(5): p. 748-764 [PMID:28044345] Xu J,Tran T,Padilla Marcia CS,Braun DM,Goggin FL Superoxide-responsive gene expression in Arabidopsis thaliana and Zea mays. Plant Physiol. Biochem., 2017. 117: p. 51-60 [PMID:28587993] Nguyen HM, et al. Ethanol Enhances High-Salinity Stress Tolerance by Detoxifying Reactive Oxygen Species in Arabidopsis thaliana and Rice. Front Plant Sci, 2017. 8: p. 1001 [PMID:28717360]