PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1BS_3761C242C.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GATA
Protein Properties Length: 146aa    MW: 16077 Da    PI: 9.8437
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1BS_3761C242C.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA62.84e-202357135
                   GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                           C+ C+tt+Tp+WR+gp g++tLCnaCG++yrkk++
  Traes_1BS_3761C242C.1 23 CVECRTTTTPMWRSGPTGPRTLCNACGIRYRKKRR 57
                           ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.6E-161767IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.99E-141959No hitNo description
Gene3DG3DSA:3.30.50.101.1E-152158IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.6642353IPR000679Zinc finger, GATA-type
CDDcd002021.85E-142358No hitNo description
PfamPF003209.6E-182357IPR000679Zinc finger, GATA-type
PROSITE patternPS0034402348IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0048527Biological Processlateral root development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MDSSHHKVIG VAPAAAEGGR MCCVECRTTT TPMWRSGPTG PRTLCNACGI RYRKKRRQEL  60
GLDNKPQNQQ LNQQQQQQQQ QQQQQQQQED HGEATSAVKD SSSSTNNKSN SLQVVKKKRT  120
VSMGVEEAAF LLMALSSSST PPLLHG
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2506741e-110AK250674.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf93f15, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020179907.12e-79GATA transcription factor 17-like
TrEMBLA0A3B5YTR71e-103A0A3B5YTR7_WHEAT; Uncharacterized protein
STRINGTraes_1BS_3761C242C.11e-104(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67212854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26930.14e-19GATA transcription factor 23
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]