PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1BS_527ED00B9.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 189aa    MW: 20504.6 Da    PI: 7.5042
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1BS_527ED00B9.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.00044365123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           ++C+ C+++F++   L  H  +H
  Traes_1BS_527ED00B9.1 43 FVCKTCDRVFPSFQALGGHRASH 65
                           89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.87E-841103No hitNo description
PfamPF139129.2E-134267IPR007087Zinc finger, C2H2
PROSITE profilePS501579.394370IPR007087Zinc finger, C2H2
SMARTSM003550.124365IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804565IPR007087Zinc finger, C2H2
PfamPF139121.3E-881105IPR007087Zinc finger, C2H2
SMARTSM003555.181103IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0071289Biological Processcellular response to nickel ion
GO:2000280Biological Processregulation of root development
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MMKRFAFEEK EMARVLLLVS QEQAMPMPMP MAVRGDRAPE RVFVCKTCDR VFPSFQALGG  60
HRASHKKPRL DDGGDLKPKL HGCSVCGLEF AIGQALGGHM RRHRAMVAGG GSGVMAMTPR  120
TAAIKKHNDS SDNAVVGMKR GLWLDLNHPP CDEYGASCEG DDECGHDAAA AGYTFHQFLD  180
IGTMAVDCV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU6503980.0EU650398.1 Triticum aestivum Q-type C2H2 zinc finger protein (ZFP46) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020201500.11e-111zinc finger protein ZAT12-like
TrEMBLA0A3B5YSB11e-137A0A3B5YSB1_WHEAT; Uncharacterized protein
STRINGTraes_1BS_527ED00B9.11e-138(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.18e-25C2H2 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]