PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_1BS_8F922CA93.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

LBD

Protein Properties

Length: 237aa MW: 24791 Da PI: 8.4898

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_1BS_8F922CA93.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	125.8	2.1e-39	56	155	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +CaaCk+lrr+Ca++C+++p f +p+kfa vhk+FGasnv+k+l +++e++r da++slvyeA+ r+rdPvyG++g il+lqqq++ Traes_1BS_8F922CA93.1 56 PCAACKLLRRRCAQECPFSPFFSPLEPHKFASVHKVFGASNVSKMLLEVHESQRGDAANSLVYEANLRLRDPVYGCMGAILTLQQQVH 143 7************************************************************************************* PP DUF260 89 qlkaelallkee 100 l+aela++++e Traes_1BS_8F922CA93.1 144 ALEAELAAVRAE 155 ******9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.114	55	156	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.2E-39	56	153	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MSTASEWQQD HDVGKKIKSE SAAEADRMMA AARRSSSLPA AGAGPGSTPS FNTMTPCAAC 60 KLLRRRCAQE CPFSPFFSPL EPHKFASVHK VFGASNVSKM LLEVHESQRG DAANSLVYEA 120 NLRLRDPVYG CMGAILTLQQ QVHALEAELA AVRAEILKHR YRPAAAAAAS AVPNVPPSSH 180 ASQLLAAGGH RPAGSLGLAA PAVGPVASAS SSTTVYATAS SSTDYSSITH ENVPYFG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-40	56	159	11	114	LOB family transfactor Ramosa2.1
5ly0_B	2e-40	56	159	11	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP095831	1e-121	FP095831.1 Phyllostachys edulis cDNA clone: bphyst036h20, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020167556.1	1e-167	LOB domain-containing protein 15-like
Swissprot	Q9AT61	6e-68	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A0A3B5YTZ2	1e-172	A0A3B5YTZ2_WHEAT; Uncharacterized protein
TrEMBL	A0A446JPG7	1e-172	A0A446JPG7_TRITD; Uncharacterized protein
STRING	Traes_1BS_8F922CA93.1	1e-173	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2630	38	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30340.1	7e-55	LOB domain-containing protein 13

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]