PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1BS_C908081B8.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WOX
Protein Properties Length: 264aa    MW: 28630.2 Da    PI: 8.219
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1BS_C908081B8.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.72.7e-201978357
                           --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
               Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                           +R+++t+eql +Lee+++   r+p+a+++++++++l    +++ ++V++WFqN++a++++
  Traes_1BS_C908081B8.1 19 TRWCPTPEQLMILEEMYRGgLRTPNASQIQQITAHLvhygRIEGKNVFYWFQNHKARDRQ 78
                           8*****************99*************************************996 PP
2Wus_type_Homeobox118.33.4e-381879364
      Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                           +tRW+PtpeQ++iLee+y+ GlrtPn+++iq+ita+L +yG+ie+kNVfyWFQN+kaR+rqk
  Traes_1BS_C908081B8.1 18 TTRWCPTPEQLMILEEMYRGGLRTPNASQIQQITAHLVHYGRIEGKNVFYWFQNHKARDRQK 79
                           79***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003895.3E-41683IPR001356Homeobox domain
CDDcd000863.35E-51979No hitNo description
PfamPF000465.8E-181978IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.8E-71978IPR009057Homeodomain-like
SuperFamilySSF466895.56E-101979IPR009057Homeodomain-like
PROSITE profilePS500719.7662479IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MAATATATAA ATSVVTGTTR WCPTPEQLMI LEEMYRGGLR TPNASQIQQI TAHLVHYGRI  60
EGKNVFYWFQ NHKARDRQKL RRRLCMSHHL LSCAHYYAAA NAGQYHHQQQ LLGAGAVPPP  120
LLQHQQQQQY YSASCAGGSY DQHLLPTTVP ASAYAAAAAG YAYPFAAVPA SRCADPSPPN  180
TPLSFHHQGG GVVGSPEYSL GRLGNFGVVD DTCRPSRCEQ QPQQLAVATE DQAAPVTATG  240
LFCRPLKTLD LFPGAIKEEQ RDVA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0401841e-108BT040184.1 Zea mays full-length cDNA clone ZM_BFc0070F13 mRNA, complete cds.
GenBankKJ7269461e-108KJ726946.1 Zea mays clone pUT3492 HB transcription factor (HB82) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164197.11e-158putative WUSCHEL-related homeobox 2
TrEMBLA0A3B5YRS40.0A0A3B5YRS4_WHEAT; Uncharacterized protein
STRINGTraes_1BS_C908081B8.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21773897
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.15e-39WOX family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]