PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1BS_E3FCA98E3.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bZIP
Protein Properties Length: 339aa    MW: 37187 Da    PI: 6.5216
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1BS_E3FCA98E3.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.44.1e-104876533
                           CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
                 bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLee 33
                           k  rr+++NReAArrsR+RKka++++Le 
  Traes_1BS_E3FCA98E3.2 48 KTLRRLAQNREAARRSRLRKKAYVQQLES 76
                           6679***********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.2E-844107IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.8754690IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.6E-84792No hitNo description
PfamPF001709.1E-84877IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.05E-74890No hitNo description
PROSITE patternPS0003605166IPR004827Basic-leucine zipper domain
PfamPF141442.2E-26129200IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MDCASPGGTD TSTDPDLDKN QAFERGHAAA GLTPPDSSHK SNGELGPKTL RRLAQNREAA  60
RRSRLRKKAY VQQLESSGLR LARLEQELQR ARQQGFLIST LGDQPDSENG DASSFYVEHA  120
RWLEEHHKQV DELRAAVGAH AGDGDLQAIV DTVMARCDEI FRLKGAAAKA DAFRVLSGTW  180
GTPVERCFLW LGGFRPSELL MVPTIIVLLA SRLEPLTEKQ LDSIDVLRRS SLQAEEALSR  240
EMEALRQSVT ETVAAAGSSS LSCSDDDCTG QMAVAVGKLG AMEGLLRQAD DLRLRILEET  300
RRVLTTRQCA RAVLVVTDYF SRMRALSSLW IARPTTGVN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16066RRSRLRK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3671721e-132AK367172.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2052H03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020175059.10.0transcription factor TGA2.3-like
SwissprotQ415581e-134HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLA0A3B5YTS50.0A0A3B5YTS5_WHEAT; Uncharacterized protein
TrEMBLA0A446JNR80.0A0A446JNR8_TRITD; Uncharacterized protein
STRINGTraes_1BS_E3FCA98E3.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2086457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-110TGACG motif-binding factor 6
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]