PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_1DL_1290B6A52.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

LBD

Protein Properties

Length: 65aa MW: 7598.72 Da PI: 8.4934

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_1DL_1290B6A52.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	93.1	3.3e-29	1	64	5	68
DUF260 5 CkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAear 68 Ck+lrrkC++dCv+apyfp ++p+kf vh++FGasnv+kll++l++ +reda++sl+yeA++r Traes_1DL_1290B6A52.1 1 CKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELNPYQREDAVNSLAYEADMR 64 **************************************************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	6.2E-29	1	64	IPR004883	Lateral organ boundaries, LOB
PROSITE profile	PS50891	20.1	1	65	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 65 aa Download sequence Send to blast
CKFLRRKCQP DCVFAPYFPP DNPQKFVHVH RVFGASNVTK LLNELNPYQR EDAVNSLAYE 60 ADMRL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-34	1	65	15	79	LOB family transfactor Ramosa2.1
5ly0_B	5e-34	1	65	15	79	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation (By similarity). {ECO:0000250}.
UniProt	Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation (By similarity). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB200237	5e-81	AB200237.1 Oryza sativa Japonica Group CRLL3 mRNA for LOB domain protein, complete cds.
GenBank	AK071407	5e-81	AK071407.1 Oryza sativa Japonica Group cDNA clone:J023089G14, full insert sequence.
GenBank	AK119575	5e-81	AK119575.1 Oryza sativa Japonica Group cDNA clone:002-117-B04, full insert sequence.
GenBank	AP003431	5e-81	AP003431.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1099D03.
GenBank	AP014957	5e-81	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBank	CP012609	5e-81	CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
GenBank	EF540766	5e-81	EF540766.1 Oryza sativa Japonica Group LOB domain protein 6 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020187374.1	3e-45	LOB domain-containing protein 6-like
Refseq	XP_020194956.1	3e-45	LOB domain-containing protein 6-like
Swissprot	A2WXT0	2e-45	LBD6_ORYSI; LOB domain-containing protein 6
Swissprot	Q8LQH4	2e-45	LBD6_ORYSJ; LOB domain-containing protein 6
TrEMBL	A0A287FZB2	2e-44	A0A287FZB2_HORVV; Uncharacterized protein
STRING	MLOC_61156.1	3e-45	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2267	38	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65620.4	5e-40	LBD family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]