PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1DL_2C7481DB3.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HB-other
Protein Properties Length: 53aa    MW: 6401.33 Da    PI: 7.7926
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1DL_2C7481DB3.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox33.38.2e-114411954
                           HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
               Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54
                           Fe   ++yps  ++  LA+++gL+ +qV++WF N R +
  Traes_1DL_2C7481DB3.1  4 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 41
                           554459******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007111.758145IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.9E-25151IPR009057Homeodomain-like
SMARTSM003890.0068249IPR001356Homeobox domain
SuperFamilySSF466891.88E-16251IPR009057Homeodomain-like
PfamPF059207.9E-20241IPR008422Homeobox KN domain
CDDcd000867.86E-11346No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 53 aa     Download sequence    Send to blast
AWLFEHFLHP YPSDVDKHIL ARQTGLSRSQ VSNWFINARV RLWKPMVEEM YAE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A7e-161491563Homeobox protein Meis2
3k2a_B7e-161491563Homeobox protein Meis2
4xrm_A7e-161491563Homeobox protein Meis2
4xrm_B7e-161491563Homeobox protein Meis2
5bng_A7e-161491159Homeobox protein Meis2
5bng_B7e-161491159Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3584096e-74AK358409.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1076A02.
GenBankAK3591126e-74AK359112.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1089L06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025793881.11e-32homeobox protein BEL1 homolog
SwissprotQ388979e-32BEL1_ARATH; Homeobox protein BEL1 homolog
TrEMBLA0A3L6TVB74e-33A0A3L6TVB7_PANMI; Uncharacterized protein
STRINGPavir.Ia02908.1.p5e-32(Panicum virgatum)
STRINGPavir.J15357.1.p7e-33(Panicum virgatum)
STRINGTraes_1DL_2C7481DB3.16e-33(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77153146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.14e-34TALE family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]