PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1DL_63D5C4C8E.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 211aa    MW: 22326.7 Da    PI: 4.3413
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1DL_63D5C4C8E.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.00013187208323
                            ETTTTEEESSHHHHHHHHHH.T CS
                zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                            C+ C+k+F++   L +H +  H
  Traes_1DL_63D5C4C8E.2 187 CKSCSKTFNSEGALASHSKAkH 208
                            *****************88777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.471185211IPR007087Zinc finger, C2H2
PROSITE patternPS000280187208IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MDFDSEDESE EEEEEKIIPA LTKENGKPEA KEQKKQVKID TAAHSKSKAA AKDVGKSKKD  60
DDSDDDDDSD EDDSEDDSGD DGALIPMEDD SDDSEDGDDS SDDSEDSSDE EEEETPKKPE  120
TGKKRAAGSV LKTPVTDKKA KIATPSGQKT GDKKGAVHVA TPHPAKKAGK TPATSEKSPK  180
SGGSVACKSC SKTFNSEGAL ASHSKAKHEA K
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ6566020.0DQ656602.1 Triticum aestivum histone deacetylase HDAC2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020199042.11e-137histone deacetylase HDT2-like
TrEMBLA0A3B6A2W31e-138A0A3B6A2W3_WHEAT; Uncharacterized protein
STRINGTraes_1DL_63D5C4C8E.21e-140(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22043065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.12e-19histone deacetylase 2C
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]