PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_1DL_6DA0DFC5B.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

MIKC_MADS

Protein Properties

Length: 157aa MW: 17841.5 Da PI: 10.493

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_1DL_6DA0DFC5B.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	92.6	1.8e-29	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++ rqvtf+kRrng+lKKA+ELSvLC+ae+a+i+fs +g+lyey+s Traes_1DL_6DA0DFC5B.1 9 KRIENTTSRQVTFCKRRNGLLKKAYELSVLCEAEIALIVFSARGRLYEYAS 59 79***********************************************86 PP
2	K-box	89.1	8.1e-30	83	156	9	82
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqk 82 + + +++ qqe+akL+ +i++Lq+ +R+l+Ge++++L+lkeL++Le++L+k++ +iR+kK+ell+++ie++qk Traes_1DL_6DA0DFC5B.1 83 IDVNSQQYFQQESAKLRHQIQSLQNANRNLMGESVGNLTLKELKSLENRLDKGIGRIRAKKHELLFAEIEYMQK 156 5667789******************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	7.3E-41	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	33.179	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	9.29E-32	2	73	IPR002100	Transcription factor, MADS-box
CDD	cd00265	7.11E-42	2	71	No hit	No description
PRINTS	PR00404	7.8E-32	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.6E-25	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.8E-32	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.8E-32	38	59	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	1.0E-22	85	156	IPR002487	Transcription factor, K-box
PROSITE profile	PS51297	12.238	88	157	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence Send to blast
MGRGKIEIKR IENTTSRQVT FCKRRNGLLK KAYELSVLCE AEIALIVFSA RGRLYEYASN 60 STRTTIDRYK KASASASGSA PAIDVNSQQY FQQESAKLRH QIQSLQNANR NLMGESVGNL 120 TLKELKSLEN RLDKGIGRIR AKKHELLFAE IEYMQKL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	1e-20	1	73	1	73	Myocyte-specific enhancer factor 2B
1tqe_Q	1e-20	1	73	1	73	Myocyte-specific enhancer factor 2B
1tqe_R	1e-20	1	73	1	73	Myocyte-specific enhancer factor 2B
1tqe_S	1e-20	1	73	1	73	Myocyte-specific enhancer factor 2B
6c9l_A	1e-20	1	73	1	73	Myocyte-specific enhancer factor 2B
6c9l_B	1e-20	1	73	1	73	Myocyte-specific enhancer factor 2B
6c9l_C	1e-20	1	73	1	73	Myocyte-specific enhancer factor 2B
6c9l_D	1e-20	1	73	1	73	Myocyte-specific enhancer factor 2B
6c9l_E	1e-20	1	73	1	73	Myocyte-specific enhancer factor 2B
6c9l_F	1e-20	1	73	1	73	Myocyte-specific enhancer factor 2B
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM502895	0.0	AM502895.1 Triticum aestivum mRNA for MIKC-type MADS-box transcription factor WM27B (WM27B gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020149610.1	1e-111	MADS-box transcription factor 21-like
Swissprot	Q8RU31	2e-94	MAD21_ORYSJ; MADS-box transcription factor 21
TrEMBL	A0A3B5Y245	1e-110	A0A3B5Y245_WHEAT; Uncharacterized protein
TrEMBL	A0A3B5ZXS0	1e-110	A0A3B5ZXS0_WHEAT; Uncharacterized protein
TrEMBL	A0A446J3D7	1e-110	A0A446J3D7_TRITD; Uncharacterized protein
TrEMBL	A0A446K1W1	1e-110	A0A446K1W1_TRITD; Uncharacterized protein
TrEMBL	A0A452Z5F3	1e-110	A0A452Z5F3_AEGTS; Uncharacterized protein
TrEMBL	A9J215	1e-110	A9J215_WHEAT; MIKC-type MADS-box transcription factor WM27A
STRING	Traes_1AL_5F5A87122.2	1e-111	(Triticum aestivum)
STRING	Traes_1DL_6DA0DFC5B.1	1e-111	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP649	37	144

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42830.1	1e-75	MIKC_MADS family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dreni L, et al. The D-lineage MADS-box gene OsMADS13 controls ovule identity in rice. Plant J., 2007. 52(4): p. 690-9 [PMID:17877710] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]