PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1DL_772D1D7DF.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family Trihelix
Protein Properties Length: 78aa    MW: 9274.65 Da    PI: 10.4281
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1DL_772D1D7DF.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix88.95.6e-282682087
               trihelix 20 rlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
                           r++++  k+plWee+s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+qlea
  Traes_1DL_772D1D7DF.1  2 RYQEAGPKGPLWEEISAGMRRMGYNRSSKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLEA 68
                           6788999********************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122037.99E-18247No hitNo description
PfamPF138374.4E-19369No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 78 aa     Download sequence    Send to blast
MRYQEAGPKG PLWEEISAGM RRMGYNRSSK RCKEKWENIN KYFKKVKESN KKRPEDSKTC  60
PYFHQLEALY RNKAALGS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3544261e-118AK354426.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1007E05.
GenBankAK3615071e-118AK361507.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1142F04.
GenBankAK3727131e-118AK372713.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3010E21.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020191229.12e-48trihelix transcription factor GTL1-like isoform X1
RefseqXP_020191230.18e-49trihelix transcription factor GTL1-like isoform X2
SwissprotQ391172e-39TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A452YIX35e-50A0A452YIX3_AEGTS; Uncharacterized protein
STRINGMLOC_14207.37e-49(Hordeum vulgare)
STRINGTraes_1DL_772D1D7DF.12e-51(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.12e-43Trihelix family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]