PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1DL_7DDE52966.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family CPP
Protein Properties Length: 230aa    MW: 23666.9 Da    PI: 7.8229
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1DL_7DDE52966.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR21.54.7e-07110146540
                    TCR   5 gCnCkkskClkkYCeCfaagkkCsee.CkCedCkNke 40 
                            +CnC+ +kCl+  C Cf +g  C    CkC dC+N+ 
  Traes_1DL_7DDE52966.1 110 KCNCSFTKCLNCQCTCFREGLSCMMGrCKCYDCENNP 146
                            8**********************8755********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011140.02143IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163413.2162147IPR005172CRC domain
SMARTSM011140.014106148IPR033467Tesmin/TSO1-like CXC domain
PfamPF036387.5E-5110145IPR005172CRC domain
SMARTSM011140.33152199IPR033467Tesmin/TSO1-like CXC domain
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MSRTTCSCPP KKCFQGTCDC LIGIELCYSG CNCSADCQNG LSLGTINPAA AQGTTPTLAS  60
GSSAAQDTAQ TQPLAPSSST AQGIAQPHPL APSSSTAAVP KPEAVGGRVK CNCSFTKCLN  120
CQCTCFREGL SCMMGRCKCY DCENNPDWLA DEDYVECACK TKNCKTRACG CNKLVLDLKK  180
LKGCNPNCTC IGCENQYGMK GADKSNAGPG GTGGTSDAGG SGSNKQIRIG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3B6A2C71e-163A0A3B6A2C7_WHEAT; Uncharacterized protein
STRINGTraes_1DL_7DDE52966.11e-164(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4176623
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]