PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1DL_83218C6CE.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family Trihelix
Protein Properties Length: 450aa    MW: 51208.9 Da    PI: 6.6025
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1DL_83218C6CE.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix77.22.6e-24128224186
               trihelix   1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sesss 77 
                            +Wt ++v++Li+a ++++e+ +++           +kk++W+++sk+m erg+++sp+qC++k+++lnkryk+++++ +++t ++++ 
  Traes_1DL_83218C6CE.1 128 KWTGSMVKLLITAASYTGEDPGADLgggrrnitvmQKKGKWKAISKVMGERGCNVSPQQCEDKFNDLNKRYKRLTDILGRGTaCNVVD 215
                            7*********************8744455667777**********************************************5489988 PP

               trihelix  78 tcpyfdqle 86 
                            + +++d ++
  Traes_1DL_83218C6CE.1 216 NPALLDCMN 224
                            888888775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.1E-18126247No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MDRSNLPPGN TTQGTPYGSL NVHGNSMQMH APSSGKHLFS QSQMPGSFTM PINRATEHDN  60
PGSGFQFVEH GKKDHHHHQQ QQQQQQQQQH NHLIKNSISD DEEHDMTEDA TDAQSGKGKK  120
GSAWHRMKWT GSMVKLLITA ASYTGEDPGA DLGGGRRNIT VMQKKGKWKA ISKVMGERGC  180
NVSPQQCEDK FNDLNKRYKR LTDILGRGTA CNVVDNPALL DCMNNLSDKM KEDARKILNS  240
KHLFYEMMCS YHNNNRVNLP EDLALQHSLQ VALRCKEEHD QRRDASGDAE EDDHSADSDY  300
EDHDEEHQAV HHSMRDPSMN KRMCHALDHG DAGFLTSSSN DGSGSLDPHG IALDINKGFT  360
DGTNLSVVRK ELASQAIELR KRRLQIEAQE LEVTEQRLKW ERFKRKKDRE IERMESENEE  420
MMLENKRLEL QLKHKELEVE LKLKGNPDHE
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3712000.0AK371200.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2127P16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020187300.10.0stress response protein NST1-like
TrEMBLA0A3B6A2L10.0A0A3B6A2L1_WHEAT; SAB
STRINGTraes_1DL_83218C6CE.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29203886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.15e-87sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]