PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1DL_985BECD17.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family CPP
Protein Properties Length: 173aa    MW: 19566.2 Da    PI: 8.1243
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1DL_985BECD17.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR23.51.1e-077311640
                    TCR 16 kYCeCfaagkkCseeCkCedCkNke 40
                           +YC Cfa g +Cse+C C  C+Nk 
  Traes_1DL_985BECD17.1  7 RYCPCFAGGGYCSEKCGCVPCFNKA 31
                           6**********************97 PP
2TCR512.8e-1679115339
                    TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                            ++gCnCkks+ClkkYC+C+++g+ Cs  C+CedCkN 
  Traes_1DL_985BECD17.1  79 RRGCNCKKSSCLKKYCDCYQDGTGCSLFCRCEDCKNP 115
                            589*********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163424.7471117IPR005172CRC domain
SMARTSM011140.028533IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.4E-4730IPR005172CRC domain
SMARTSM011146.5E-1577118IPR033467Tesmin/TSO1-like CXC domain
PfamPF036388.5E-1280114IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MIIYVCRYCP CFAGGGYCSE KCGCVPCFNK ADFAETVQTT RKVLLSRQKR MSLKINRRLE  60
ANAETMEDAH NSSSSTPPRR GCNCKKSSCL KKYCDCYQDG TGCSLFCRCE DCKNPYGKNE  120
GFMADESKRF IYTGADLDHS EDEHDFIVER SPRLQSPISK ESSFQHTPPR SKA
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3678660.0AK367866.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2063M24.
GenBankAK3745570.0AK374557.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3069A23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020157750.11e-121protein tesmin/TSO1-like CXC 3
TrEMBLT1LYG71e-122T1LYG7_TRIUA; Uncharacterized protein
STRINGTraes_1BL_80DD53F05.21e-125(Triticum aestivum)
STRINGTraes_1DL_985BECD17.11e-126(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101592937
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22760.15e-33Tesmin/TSO1-like CXC domain-containing protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]