PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1DL_9FB53E48A.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HB-other
Protein Properties Length: 128aa    MW: 14621.6 Da    PI: 8.9668
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1DL_9FB53E48A.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.69.1e-181421556
                           HHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox 15 LeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                           +e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k
  Traes_1DL_9FB53E48A.1  1 MEALFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMK 42
                           79*************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.85E-15145IPR009057Homeodomain-like
CDDcd000864.02E-14145No hitNo description
Gene3DG3DSA:1.10.10.607.7E-17149IPR009057Homeodomain-like
SMARTSM003895.4E-7148IPR001356Homeobox domain
PfamPF000462.9E-15142IPR001356Homeobox domain
PROSITE profilePS5007115.742144IPR001356Homeobox domain
PRINTSPR000314.5E-51524IPR000047Helix-turn-helix motif
PROSITE patternPS0002701942IPR017970Homeobox, conserved site
PRINTSPR000314.5E-52440IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MEALFKECPH PDDKQRLKLS QELGLKPRQV KFWFQNRRTQ MKAQQDRADN VILRAENESL  60
KTDNYRLQAA IRNVVCPSCG HAAVIGDMSY EEQNLRIENA RLKDELDRLA CIASRYGGGR  120
QPGMSSAS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2509861e-128AJ250986.2 Zea mays mRNA for OCL4 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020163828.11e-85homeobox-leucine zipper protein ROC3
SwissprotQ336P22e-76ROC3_ORYSJ; Homeobox-leucine zipper protein ROC3
TrEMBLA0A287FIJ36e-87A0A287FIJ3_HORVV; Uncharacterized protein
STRINGTraes_1DL_9FB53E48A.11e-91(Triticum aestivum)
STRINGTRIUR3_19363-P15e-86(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5628322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.13e-53homeobox-7
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  3. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]