PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1DL_AD1D08A18.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 969aa    MW: 108930 Da    PI: 4.704
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1DL_AD1D08A18.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH277.7e-09442464527
                            --SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                            +C+ ++  GtC yG++C+F+H+p
  Traes_1DL_AD1D08A18.1 442 NCPSYMSKGTCTYGPSCHFNHPP 464
                            7********************96 PP
2zf-CCCH35.61.6e-11502524426
                            ---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                            ++C++++rtG C+yG +C+F+H+
  Traes_1DL_AD1D08A18.1 502 RNCDYYMRTGACRYGKNCHFNHP 524
                            79********************9 PP
3zf-CCCH28.82.2e-09701727127
                            --S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                            ++++ C+f++r+G Ck+ + C+++H++
  Traes_1DL_AD1D08A18.1 701 PGRADCPFYMRFGDCKFASACNYHHPK 727
                            6899*********************96 PP
4zf-CCCH35.91.3e-11736761227
                            -S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                            ++++C+f ++ G+Ck+G++CkF H++
  Traes_1DL_AD1D08A18.1 736 DEPECPFLMKRGYCKFGAQCKFYHPE 761
                            689*********************96 PP
5zf-CCCH21.73.5e-07805831127
                            --S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                            +++++Cr+++++G Cky + C F+H++
  Traes_1DL_AD1D08A18.1 805 PGQPECRYYMQFGKCKYLSACIFHHPK 831
                            5789*********************96 PP
6zf-CCCH28.52.6e-09848872327
                            S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                            ++ C+f+++ G C++G+ C F H++
  Traes_1DL_AD1D08A18.1 848 MPDCPFYMKAGKCQFGSACEFRHPK 872
                            789********************96 PP
7zf-CCCH18.24.5e-06914940127
                            --S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                            +++++C +++r G+Ck+  +Ck++H++
  Traes_1DL_AD1D08A18.1 914 PGEPECAHYMRQGYCKFQMNCKYHHPK 940
                            5799*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.192437465IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-5437464IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-4437464IPR000571Zinc finger, CCCH-type
PfamPF006425.6E-7442464IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-5443463IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.601498526IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-6498525IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-6501526IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-9502524IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4504524IPR000571Zinc finger, CCCH-type
SMARTSM003560.0035700727IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.023700728IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-6701727IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.187734762IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-4734761IPR000571Zinc finger, CCCH-type
PfamPF006426.1E-9736761IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-5738762IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-4740762IPR000571Zinc finger, CCCH-type
SMARTSM003560.012804831IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.422804832IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-4806831IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-4845872IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.014845873IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-7848872IPR000571Zinc finger, CCCH-type
SMARTSM003560.022913940IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.056913941IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 969 aa     Download sequence    Send to blast
MENDDDAVQV QEAAVEQQDA THPRDEDIAV EGQETPEAHQ LGSTENADAL VQVQEEGESA  60
DATAVDDHDK AVEQCTTYHD LGTTMENDVA KDDPEEAEQG VIDQGDAAID DVKDHEVLLL  120
VAVEGTRATT DDIAAVEDQG NNVEQCTTYY DLGTTMKSDD DVDDQQVVEE RVVDLTMDDD  180
DSVQDHKVLQ QGIIDGTDDI AVEKQEKVLE QCSRATKDEY TVKEKEMVVE QGVIDPRYMD  240
LATEDQVKLS IVDDQGTVPM DDIVVKDHDK AVVQYASDAI VTIKDESPVE EHDTVGNQGV  300
IDKNGRTKDD IDVEGHGYVK EQVIVDNWGT SSDATALEGQ KNEAEPRIGD EQIAGKDMDG  360
VHAEGNMLEQ RTGDKQGATQ SDFTVDKHKD VAERVRHERG APEDDRAMDR TAYQGTGDWG  420
IVSKEKYKLP ARRYPQKPRK LNCPSYMSKG TCTYGPSCHF NHPPQLKSRS DESWRPSERR  480
NHGAAEILEL NRLGLPIREG ARNCDYYMRT GACRYGKNCH FNHPDHVIDA QFNPPTGWED  540
NALQMEKSSD HTLDETSRMK KSSDDATFDD RSHMKKSSDD ATLDDRSHLK KPSDGAIVDD  600
TSYSKKSSDH DNSSSSGVLP PSIFRMLLPP QKVLPSTEGK AKKKSDWSSD DSDGCCSADS  660
SDGPLCKQGE HVDYPERPGR PEYHHPKQSK DKEEVHYPER PGRADCPFYM RFGDCKFASA  720
CNYHHPKDKY PAARPDEPEC PFLMKRGYCK FGAQCKFYHP EDSNPTVQSP TDAKRSVTTD  780
EHHPSTRITL QDYMLPQQPQ YPERPGQPEC RYYMQFGKCK YLSACIFHHP KDRLAAHSDQ  840
IGPEIHGMPD CPFYMKAGKC QFGSACEFRH PKDIHSTTEE AFGQRTGSGA YDNLSRSDNG  900
VEQQEESIMY PERPGEPECA HYMRQGYCKF QMNCKYHHPK KHEVIRADHL SKAGTRWLPH  960
ECYQRKALS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3692020.0AK369202.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2086J19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020181184.10.0uncharacterized protein LOC109766829
TrEMBLA0A453A5Y20.0A0A453A5Y2_AEGTS; Uncharacterized protein
STRINGTraes_1DL_AD1D08A18.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147291820
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.13e-40floral homeotic protein (HUA1)
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]