PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_1DL_C5AF9D06A.1

Common Name

YAB1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

YABBY

Protein Properties

Length: 115aa MW: 12787.5 Da PI: 10.774

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_1DL_C5AF9D06A.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	135.7	5.7e-42	11	75	107	170
YABBY 107 eevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 e +pr+ p v+rPPekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP+ihfgl Traes_1DL_C5AF9D06A.1 11 EPSPRTNPvVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 75 5567877769*****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.8E-39	13	75	IPR006780	YABBY protein
SuperFamily	SSF47095	6.41E-9	13	69	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	6.2E-5	24	67	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 115 aa Download sequence Send to blast
PPVAGGKGGK EPSPRTNPVV NRPPEKRQRV PSAYNRFIKD EIQRIKAGNP DISHREAFSA 60 AAKNWAHFPH IHFGLMPDHQ GLRKTSLLPQ DHQRKDGHGL LKEGLYAANM GIAPY

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY330228	0.0	AY330228.1 Triticum aestivum YABBY protein (YAB1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020178920.1	4e-81	protein YABBY 3-like
Swissprot	Q8L556	2e-63	YAB3_ORYSJ; Protein YABBY 3
TrEMBL	A0A3B5XZY0	1e-79	A0A3B5XZY0_WHEAT; Uncharacterized protein
TrEMBL	A0A3B5ZT37	9e-80	A0A3B5ZT37_WHEAT; Uncharacterized protein
TrEMBL	A0A446IWC0	8e-80	A0A446IWC0_TRITD; Uncharacterized protein
TrEMBL	A0A452YJ07	9e-80	A0A452YJ07_AEGTS; Uncharacterized protein
STRING	Traes_1DL_C5AF9D06A.1	3e-80	(Triticum aestivum)
STRING	TRIUR3_27479-P1	5e-80	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1445	38	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45190.1	1e-47	YABBY family protein

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992]