PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1DL_D25CDC57D.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MIKC_MADS
Protein Properties Length: 167aa    MW: 19468.3 Da    PI: 10.206
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1DL_D25CDC57D.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF75.54e-24959150
                           S---SHHHHHHHHHHHHHHHH.HHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                 SRF-TF  1 krienksnrqvtfskRrngil.KKAeELSvLCdaevaviifsstgklyeys 50
                           krien+snrqvtf+kRr+g+  KKA E+ vLCdaev v+ifss gkly++ 
  Traes_1DL_D25CDC57D.1  9 KRIENSSNRQVTFAKRRAGLVxKKAREIGVLCDAEVGVVIFSSAGKLYDFW 59
                           79*****************966**************************995 PP
2K-box66.31.1e-2278165188
                  K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 
                            yq++sgk l+++k++s + e++++kke++n+q e+Rh++Ged++sL+ keL  +e++L ++ ++ R+k +++++++ ++ ++ e+e++
  Traes_1DL_D25CDC57D.1  78 YQTNSGKILWDEKHKSISAEIDRVKKENDNMQIELRHMKGEDVNSLQPKELIAIEEALTNGQTNLRDKMMDHWKMHRRNEKMLEEEHK 165
                            89999999************************************************************99999999999888888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-35161IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.497162IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.19E-272102IPR002100Transcription factor, MADS-box
CDDcd002654.44E-36287No hitNo description
PRINTSPR004043.8E-19323IPR002100Transcription factor, MADS-box
PfamPF003191.4E-211058IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-193960IPR002100Transcription factor, MADS-box
PfamPF014861.1E-1489167IPR002487Transcription factor, K-box
PROSITE profilePS5129711.56291167IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MGRGKIEIKR IENSSNRQVT FAKRRAGLVX KKAREIGVLC DAEVGVVIFS SAGKLYDFWT  60
PKTTFAFAVR LPRILEKYQT NSGKILWDEK HKSISAEIDR VKKENDNMQI ELRHMKGEDV  120
NSLQPKELIA IEEALTNGQT NLRDKMMDHW KMHRRNEKML EEEHKLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P6e-16193178Myocyte-specific enhancer factor 2B
1tqe_Q6e-16193178Myocyte-specific enhancer factor 2B
1tqe_R6e-16193178Myocyte-specific enhancer factor 2B
1tqe_S6e-16193178Myocyte-specific enhancer factor 2B
6c9l_A6e-16193178Myocyte-specific enhancer factor 2B
6c9l_B6e-16193178Myocyte-specific enhancer factor 2B
6c9l_C6e-16193178Myocyte-specific enhancer factor 2B
6c9l_D6e-16193178Myocyte-specific enhancer factor 2B
6c9l_E6e-16193178Myocyte-specific enhancer factor 2B
6c9l_F6e-16193178Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the development of floral organs. B-class protein required for normal development of lodicules and stamens (whorls 2 and 3). May function as a heterodimer with MADS16. {ECO:0000269|PubMed:9869408}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1079911e-162AB107991.1 Triticum aestivum WPI1 mRNA for PISTILLATA-like MADS box protein, complete cds.
GenBankAM5028801e-162AM502880.1 Triticum aestivum mRNA for MIKC-type MADS-box transcription factor WM14 (WM14 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020166620.11e-110MADS-box transcription factor 4-like
SwissprotQ407031e-102MADS4_ORYSJ; MADS-box transcription factor 4
TrEMBLA0A452Z5T31e-117A0A452Z5T3_AEGTS; Uncharacterized protein
STRINGTraes_1DL_D25CDC57D.11e-120(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34343877
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.14e-60MIKC_MADS family protein
Publications ? help Back to Top
  1. Ronai Z, et al.
    Transcription factor binding study by capillary zone electrophoretic mobility shift assay.
    Electrophoresis, 2003. 24(1-2): p. 96-100
    [PMID:12652578]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Kang HG,An G
    Morphological alterations by ectopic expression of the rice OsMADS4 gene in tobacco plants.
    Plant Cell Rep., 2005. 24(2): p. 120-6
    [PMID:15703945]
  4. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  5. Chen C, et al.
    Adapting rice anther culture to gene transformation and RNA interference.
    Sci. China, C, Life Sci., 2006. 49(5): p. 414-28
    [PMID:17172048]
  6. Yoshida H, et al.
    superwoman1-cleistogamy, a hopeful allele for gene containment in GM rice.
    Plant Biotechnol. J., 2007. 5(6): p. 835-46
    [PMID:17764519]
  7. Yao SG,Ohmori S,Kimizu M,Yoshida H
    Unequal genetic redundancy of rice PISTILLATA orthologs, OsMADS2 and OsMADS4, in lodicule and stamen development.
    Plant Cell Physiol., 2008. 49(5): p. 853-7
    [PMID:18378529]
  8. Seok HY, et al.
    Rice ternary MADS protein complexes containing class B MADS heterodimer.
    Biochem. Biophys. Res. Commun., 2010. 401(4): p. 598-604
    [PMID:20888318]
  9. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  10. Wang H, et al.
    OsMADS32 interacts with PI-like proteins and regulates rice flower development.
    J Integr Plant Biol, 2015. 57(5): p. 504-13
    [PMID:25081486]