PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1DL_EDA7A1267.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 88aa    MW: 9875.1 Da    PI: 8.551
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1DL_EDA7A1267.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.98.4e-17346146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                           rg+++++E++ ++ +++ lG++ W+ Ia++++ gRt++++k++w++
  Traes_1DL_EDA7A1267.1  3 RGSFSQQEEDHIIALHQILGNR-WSQIASHLP-GRTDNEIKNFWNS 46
                           89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.681152IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-22152IPR009057Homeodomain-like
SMARTSM007179.0E-14250IPR001005SANT/Myb domain
SuperFamilySSF466894.37E-15358IPR009057Homeodomain-like
PfamPF002493.5E-15346IPR001005SANT/Myb domain
CDDcd001678.22E-11545No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
LRRGSFSQQE EDHIIALHQI LGNRWSQIAS HLPGRTDNEI KNFWNSCIKK KLRQQSIDPA  60
THKPMGATAT AALPDAEEED RKTLSAAV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-1415257108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3643781e-88AK364378.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2024H18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158685.15e-58myb-related protein Hv33-like
SwissprotP200274e-42MYB3_HORVU; Myb-related protein Hv33
TrEMBLA0A3B6A1L21e-56A0A3B6A1L2_WHEAT; Uncharacterized protein
TrEMBLA0A452ZQS71e-56A0A452ZQS7_AEGTS; Uncharacterized protein
STRINGTraes_1DL_EDA7A1267.18e-60(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23273391
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.12e-32myb domain protein 86
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]