PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1DS_34596D06E.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family Trihelix
Protein Properties Length: 232aa    MW: 25163.6 Da    PI: 6.0535
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1DS_34596D06E.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix64.52.3e-2049117168
               trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikege 68 
                            +W++ e+ a +++r ++++++ ++k++k+lWe+vs+++ +++gf r+p qCk+kw+nl +r+k ++  +
  Traes_1DS_34596D06E.1  49 QWSHAETAAFLAIRADLDHSFLSTKRNKALWEAVSARLnAQGGFARTPDQCKSKWKNLVTRFKGTASDA 117
                            7*************************************88999********************998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122037.31E-2248113No hitNo description
PfamPF138371.4E-1649142No hitNo description
Gene3DG3DSA:1.10.10.607.3E-449106IPR009057Homeodomain-like
PROSITE profilePS500907.45750107IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MDPFHHLNTA FSNPYHPLLS SSPPHPYHPP PPLPPPPAAD PPERERLPQW SHAETAAFLA  60
IRADLDHSFL STKRNKALWE AVSARLNAQG GFARTPDQCK SKWKNLVTRF KGTASDAQPE  120
GGDHPAGAAA RGSFPFHDEM RRIFDARVER ARALEAKKAK GKDAAARRDP DDDGGGEGDE  180
GEDDEEEAEM VDEEEGRADA EARGAGRKRR RKAAPARTAS AGGGVEIGEV EA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1206210RKRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00481DAPTransfer from AT5G01380Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3759480.0AK375948.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3110L24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020178214.11e-166trihelix transcription factor GT-3b-like
TrEMBLA0A3B5ZPU71e-164A0A3B5ZPU7_WHEAT; Uncharacterized protein
STRINGTraes_1DS_34596D06E.11e-165(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125953134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.11e-28Trihelix family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]