PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1DS_5998ADCA3.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 122aa    MW: 14422.6 Da    PI: 7.5054
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1DS_5998ADCA3.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS103.82.4e-323114263374
                   GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyr 350
                            +ys +fd+l+a++pr++++r+++Er l+g ++ n++acega+r+er e++++W++r  +aGF+++p+++ + k++ ++ +  + +++ 
  Traes_1DS_5998ADCA3.1   3 HYSPMFDMLDANVPRDNKARKMIERILFGMDALNIIACEGADRTERPESYRQWQARCLKAGFQQLPVDQAILKNIVHMKNSLYHEEFF 90 
                            8**********************************************************************************999*9 PP

                   GRAS 351 veeesgslvlgWkdrpLvsvSaWr 374
                              e++g+l++gWk+r L+++S W+
  Traes_1DS_5998ADCA3.1  91 AVEDRGWLLQGWKGRVLYAISKWK 114
                            ***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098517.543194IPR005202Transcription factor GRAS
PfamPF035148.3E-303114IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MLHYSPMFDM LDANVPRDNK ARKMIERILF GMDALNIIAC EGADRTERPE SYRQWQARCL  60
KAGFQQLPVD QAILKNIVHM KNSLYHEEFF AVEDRGWLLQ GWKGRVLYAI SKWKPDETYD  120
NQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198294.12e-76scarecrow-like protein 9
TrEMBLA0A3B5ZMX71e-87A0A3B5ZMX7_WHEAT; Uncharacterized protein
STRINGTraes_1DS_5998ADCA3.12e-88(Triticum aestivum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.15e-39GRAS family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]