PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1DS_A0312C264.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family M-type_MADS
Protein Properties Length: 77aa    MW: 8570.98 Da    PI: 10.8519
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1DS_A0312C264.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.31.5e-26959151
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           ++ien++ rqvtfskR+ g++KKA EL vLCda+v v++fs+tg+ly+ys+
  Traes_1DS_A0312C264.1  9 EKIENTTSRQVTFSKRKGGLFKKARELGVLCDAQVGVLLFSNTGRLYDYSN 59
                           58***********************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.3E-33160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.09161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-25361IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-25323IPR002100Transcription factor, MADS-box
PfamPF003192.5E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-253859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 77 aa     Download sequence    Send to blast
MVRGKTVIEK IENTTSRQVT FSKRKGGLFK KARELGVLCD AQVGVLLFSN TGRLYDYSNS  60
NTGISLLFLR MLGNLSQ
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL42 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269|PubMed:21609362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3714423e-86AK371442.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2134C13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165070.14e-39MADS-box transcription factor 23-like
SwissprotQ9LT934e-25AGL71_ARATH; MADS-box protein AGL71
TrEMBLA0A446IJN47e-41A0A446IJN4_TRITD; Uncharacterized protein
STRINGTraes_1DS_A0312C264.12e-48(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51870.21e-27AGAMOUS-like 71
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]