PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1DS_A31FB6CB2.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family LBD
Protein Properties Length: 215aa    MW: 22033 Da    PI: 6.6104
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1DS_A31FB6CB2.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601345.8e-42321311100
                 DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                            +CaaCk+lrr+C++ Cvlapyfp ++p+kfa +h++FGasn++kll++lpee+r da+ss+vyeA arardPvyG++g i +lq+q++
  Traes_1DS_A31FB6CB2.1  32 PCAACKILRRRCVDRCVLAPYFPPTDPHKFATAHRVFGASNIIKLLQDLPEEQRADAVSSMVYEAAARARDPVYGSAGAICQLQRQVD 119
                            7*************************************************************************************** PP

                 DUF260  89 qlkaelallkee 100
                             lka+la++++e
  Traes_1DS_A31FB6CB2.1 120 GLKAQLARAQAE 131
                            *******99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.0231132IPR004883Lateral organ boundaries, LOB
PfamPF031951.4E-4132129IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MESSGDTAPL HSSPTPTSPP AMATGTAVVM SPCAACKILR RRCVDRCVLA PYFPPTDPHK  60
FATAHRVFGA SNIIKLLQDL PEEQRADAVS SMVYEAAARA RDPVYGSAGA ICQLQRQVDG  120
LKAQLARAQA ELAAARAHHA HLVALLCVEV ATAAAAPPQD AYCAAGGGSQ SQLAAPPGVG  180
STPADALYVV DGSAVGGGGI MQAGHVGWAD EPLWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-413113210111LOB family transfactor Ramosa2.1
5ly0_B4e-413113210111LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020176565.11e-154LOB domain-containing protein 1-like
SwissprotQ9LQR02e-58LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A3B6D4M31e-152A0A3B6D4M3_WHEAT; Uncharacterized protein
TrEMBLA0A452XTA31e-152A0A452XTA3_AEGTS; Uncharacterized protein
STRINGTraes_1DS_A31FB6CB2.11e-153(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26453790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.14e-52LOB domain-containing protein 11
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]